G536585


Basic Information

Item Value
gene id G536585
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66928565 ~ 66932555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU607563
GCCCACAGCGCAGGATGCTAGGGGGATGGCGAAGGAGCCAGGGACAAGGGGAGATGAAGGAAATGGGCTCTGCCACAAGGGACTGGTGGGGTAAGTGGAAATTCGAGAACAACCAACACAGAGAAACTTTAAGCTTGTGGTGTTGTCCTAGAGACGACTGAGGGGTGGGACAAAAAGAAGcgcccctcactctctctctcgctctttctctcgctctcccttctcAAGCACAACCCCCTGTGCCAGGCAACCAGCCAGGCAGCGTACGCCATGCCAACCTGCTCATCGACAGTCACGGCGCACCCTAGGAAAACACAGGAGATGAAAAGGCACCATGTCTTTTTCATATGGAAGGTGGCGTTTACGGATTTGCGGGAAAGTCACCACTTCTGAGGATGCCCGAGGAGCGCGGTGATTCGATACCCACGATCTTCGAGAGGTGTACCAGCGGGAACGCGGTGGCATCTGTCGCGGAAAAATGTAAGGGGGCGAGAGATGGTACACAACGATCAAGAGCAAATCAACACGATCGGGCATCCGTCGCGGGTCGCTTGGCAAAGATAAAGAAAGCCAAGTGCAAACAAAGACCATCTAGTGCTTCAAATGACTAATTAGAACAACAAAAGTTTGCTCTGTTAATTAGCGCGACGGACAGAATGAAAGGAAGGGGAAagataacaaacaaaacaaagcgggggaaaacaagacaaaacaaaagctcaagctgttctgtggggaggggagggtgtgaAGCTGGTGCCTGTTTTTGtgccaacccccccacccccctcctcctcctctaacacACCATTTTCATCCAGCTCTCATCAATCCGGCCGGCAGCCACTGCGATGAGGAATGTCTACCATGGGCACTGCTGCCTGCCTCCATGCCGCAGACCCTGCCATTCTGCCAatcgcctgcctgcctgccagccacaagaggggagggaggaagaaaggaCCTGAGGGACTGTGCCAACGTCTCAACAGCAGCTGtttacaaagacacacacacaaaaagaaaaAAACTGCAAACATGAGGACGCATACTAATGAACCGCCAACACATTATAATCAGCGGACAGACAGGAATTAATTTACTTTTCTCTCTGCGTTCGTTTAAATAGTTTTTGTTTTTCGCGAGAGAAAAACTTATCGCGCATCATGGTTTCCTCCAGGTGTGTGGGATTTATGCGTGACAGGAACAACTTcttgaaaaaagaaaaaaagaaaaggcAAAAACAGAAAGCATGAAAATCTACTTCAGCAGCAAGCTAAGCTATGCCAGAGaggcaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatttatCTACATTCACAGCAATCACCAGGGAGATGAATGGCTCAGGCTGTAGGCTCTATACAGCATCCACCAGTATGGGAACCAGACTGAGGCGAGGGGGATGCCACACAGACAACAGACATGCTGGAACTCAGTGGAGGGGGCAGGGGCACAGGAGGCAGGGGGACAGGAGCAGCAGTCCcggccacagacacacacactggtggggtggggaggggaggagatacCCTACCCCAGCCGGCCTGCCTGCAGCTCCGCCAGGCGGGGGTAGGGGGGCCGTGGGAACACTTTCGTCACCCCCTCACCCACGCTTTTTAGTTTGCCCCCTCCTTGCCAACCAACCAAAGGAACTACAAAACTCCACCCTTTGTGTTTTTATTGGTGTAAAGTGGAAGGGTAAACTATGAGGAACCGATGCAGAAGGGGTACCAACCGGTTCGGTTCACGGGTCTTGGTACTTACGGGGACCGGAAGAACGTTGCCGTGGTTCCCACGAGGTCCACTGGCATCAGGCACAGAGCCAAGGATCGGCGCCGCTGCAAACAGACAGGTTGGAGGGTTTCATTAAGTTCACTAATTGCACCGGAATAATTACAACAATTAGCAAGGAAGAAATCAACATCAGCCATTGGCCATCACAAATGGATATCCCAAACTTTTTTTTCCCTCTTGCTGGATTTTTGTTGGACAACAGGGCACGGTTGTGGAATATGAATAATTGAAGAAGCCATCCAAAGGGAGGGATTATAAGATCTTTGTGCTTCATACATTGCCTTGGCATACACCACCAAGATGTCAGAGCCAGGCTGCCACCAGTAAGGATAGGCTGGTATGGATGGTGGCATCTTTTTGGGCATCTACGCCGCAGTCGCTTAAACCTGCGATCCAAATACACACAATTAACGGTTTAATTCGTAATTCTGTTGTGTTTTTTCCCGTAACCTTCACGGGCGGAACGCGTGTGGATATTATCATCTTTCGGAGCTAATGAGGTTTGGATGATCGGCCTTTTATTTAATTCCAAGGGGGATGTTAATTGCGCCACGTCTTCATTACACAAATGGATTACCAAAAAAAGAGAGCTCGcagcagagcaggagagagaaaggggggaaattgagagagagggagagattgagaaagGGGGGATATTTTCCTTCCTTCTATAATAAGACAGCATTCAAATAATGCAACACTACTCGCAAACAAGCAGAGAAAAGCTCCTGCAATGCTTGGCAATGCTAGTCTCTTCAAGTGCTATCCTGGAAAACCtggtctctgcctcctctcctttcctctctgctctctacaGCTCCAGTCCTCAGCTCTGGGGACTTTGCCTTCACTTCTCTGGATGTGGATCTTACAAAACAGGAGTGAGAATATACCCTGCCTGGAATTTAATTTCTCTCAATTGGATATTATTAGTGTTCTCCTATAATTAGTATTGAGCTTTGTTCCAGTGGTGTCTGTCGTTGGCGCCGGGCGAAGCGGAATGGAGAAGAGACAACAGACACTGTGGCGGGCACAGGCTAATGTCCTCTGTGCTTAATCATCCTTCAGCAGAATGGTTTTATGCATATTTCATTTGCATATCATTAAATCGCTAAGGCACATTGGCAACTGGCAGCGGAGAGCGAGGGAGTGGAAATGGAGGAGCCCAAAGTGTAAAAAAAGGAAAGAGCGACTCATTATGCGATGGCAATCTTCAAAGCCGTGTGCCTGCTATTCCAGCAACCTGCCAATTGGTTTTAATTGAACGTTAATTAAAAAAGTGGGCGCGCTCAACCTTTCCAAGTCGGATTAATTGAGTGTCTTCCAATCTGCGCAGCAAGGACTCGTCATACAtgcagtatatgtgtgtgtgtgtatgtaaattaTGTGGATATCTATGGTTATAGTACATTATTACAGGACgacttgaaaaaaaaatgtaatccctgTAATTACAGCACCTTTTAACGGAATGGATTTTTTTCCCCACTTTTTTTCGCAGACGATTTAGTGGAGAACAAATCGCAAATATGTATTCTGTGATCTCTGGATATCATTAATACAACAAAATCATGTTGACGAGGAAGCGGGCATTTTACTCTTAATTACATTTGACCTGCTGTAATGGTTTAACATTCTCTACTTGGGAAGGTGGCAGCTGCTGCTGGCAGCGGGCGGGCAGCGCCAGCGAGTCGGGTTgtgggaccagggaccaggggaGCTGAAACCTGGTGACTCGGGGCACAGAGATAAGCAGGGAAATCGCTGGAGGCATTCTGTCGCAACCCTTCACCATGTCCTTGGGAAAAGACAAAACCAACCCAACTGCCCAAACATGCCCCCCGTctgaaaaataaatgttgtgtAATTTATGCACAAATTAATATGCTTGCCTGGACTCTGATTGCCTGTATTAAATCATTACAGGCGATTAATCCATTGTTTCTGATTCCAGAATGTCCCCTCCTCCCACTCCCCCCCTCTGTCTGGTGCACTGTCCTTTTGTGATTGGACACAAGGGGTGCATTGTTGGCTcccaagatacacacacacacaattaattaAGGCGTACAGATTGTGGACCGTTTCTGTCTCCCCCCCACTGTCTGTTTCAGT

Function

NR:

description
PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU607563 True 3943 lncRNA 0.48 2 66928565 66932555

Neighbor

gene id symbol gene type direction distance location
LOC110526948 LOC106562086 coding upstream 152233 66756330 ~ 66776332 (+)
LOC110526393 LOC106587180 coding upstream 175125 66748816 ~ 66753440 (+)
LOC110526947 LOC105029748 coding upstream 208124 66719808 ~ 66720441 (+)
LOC110526392 LOC106587181 coding upstream 281142 66609230 ~ 66647423 (+)
LOC110526390 LOC106587182 coding upstream 326428 66597778 ~ 66602137 (+)
LOC110526401 LOC106587347 coding downstream 595587 67528142 ~ 67544856 (+)
LOC110526949 mald3 coding downstream 711259 67643814 ~ 67644573 (+)
LOC110526406 LOC106587353 coding downstream 804255 67736810 ~ 67753397 (+)
LOC110526410 myo1e coding downstream 916719 67849274 ~ 67897779 (+)
LOC110526412 LOC106587340 coding downstream 1027259 67959814 ~ 67973591 (+)
G536409 NA non-coding upstream 277055 66648557 ~ 66651510 (+)
G536400 NA non-coding upstream 341448 66583358 ~ 66587117 (+)
G536394 NA non-coding upstream 354714 66573556 ~ 66573851 (+)
G536393 NA non-coding upstream 355069 66573241 ~ 66573496 (+)
G536392 NA non-coding upstream 356173 66572059 ~ 66572392 (+)
G536994 NA non-coding downstream 79616 67012171 ~ 67012394 (+)
G537000 NA non-coding downstream 104074 67036629 ~ 67036990 (+)
G537004 NA non-coding downstream 107805 67040360 ~ 67040589 (+)
G537007 NA non-coding downstream 115734 67048289 ~ 67048510 (+)
G537014 NA non-coding downstream 140579 67073134 ~ 67073374 (+)
G536406 NA other upstream 324512 66602785 ~ 66604053 (+)
G535150 LOC106587155 other upstream 1079124 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1767235 65065380 ~ 65178884 (+)
G534653 NA other upstream 1810609 65113280 ~ 65169563 (+)
G534453 NA other upstream 2081461 64790322 ~ 64847104 (+)
G536995 zfhx3 other downstream 80665 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 171751 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 177121 67109676 ~ 67110628 (+)
G537606 NA other downstream 822001 67754556 ~ 67756618 (+)
G537617 atxn1l other downstream 834201 67766756 ~ 67767613 (+)

Expression


Co-expression Network