G536995 (zfhx3)


Basic Information

Item Value
gene id G536995
gene name zfhx3
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67013220 ~ 67018653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU608020
GGAGGTGCTTCCGACACCTGGCAGAAGTCCAGGGGGCATCCCTTGCAGATTTGAATAGGCAGACTGAAGGTTCAGGGCCTGCAGGGCGGGGCTATCAAAGATCCCCTGCTGCTGCATGGCTTGCTGCTGTGCCAGTCCCAGGACCTCATTGGCTTTCTTGATGCGATCCATCTCCTGCTGGGCCATTAGCTGACGGACAGTGGCTGGGTCAAAGTACTCCTTCTCCTTGTCCAGTTGGCTCCCAATGGTGTCCTTTACCTTGGTGATGTGTTGCGCAGAGAAGATGTGATCTCGCACGGAGAGACGGGCACTGTACTTGACACCGCACAAAGAGCACTCCGTCTTCGGCCCCTCGTAGGATGTGTGGTTGATCCCGAAGTGCTTAGCCATGCTGAGCTTGGCCTTTTTCTCCTTGGCGCGAGCATTCTGGAACCACACCTGAACCACCCTCTTTGGAAGTCCGATATCATTGCCAAGTACCTCACACTCCAGCATGGTAGGTGTCCTGTAGTCATTGAAGCAGGACTTGAGCAGCTTCAGCTGGAGGTTAGTCATCTGAGTTCGGAAGCGCTTCTGGCCAGGACGGTCTCCACTGTCGATGCTCCTGCTGCCGGAAGCTCCGGGGCTTGGTGAGCAGGGATCAGCCAGACTGGAGGTCTCACTGTAGTCAATTATATTCTCATTTTCATAGTCTCTAGCATAATAGCTTGTCGCAGGGCTCACCAGCCCTGAGGACATCTGGTCGTCATTTTCAAGGGAGGGGGCTGTACCCACAGACTTAGATAGATAATCACCACTATTTTGACCATGCTTTTGATCAGCACTGTCATTGTCAGCATTGGCCTCATCACCAGTGGTGGTATCTGTGATGGCCGTATTCACTGAAGAACAGTCGTCATTATCAAGTTTGTTCTGGTCAAAGCTAAGGTTGACAGAGGACATAGATGGACTCTCAAAGTCCTCCATTCCTCCTTCAACTTTAATGGATGAAGGGCTCATAAGGGCCCTTGGAGACAAGTCCATGTTTTTGCTCACTGGTGACAGAGAGGAGCATTGTCCATCATTGTTAGAAGGTGCAAGCTGGGAATAGCTGGAGATATCCAGAGGATCCATCTTCATTTGCATCCCTTCCTCAGTGAACATGCCAGAGAGAGCTAAGTTGTAACCGGCACGTTTGGCTTCATGCCAATGGCGGGAACGGATATGTGCCTCTAGTGCAGTTTTCGCCttgaagagagcacgacaaaaaGGGCATCGCCGGTGAGCTTGAGCAGGCCCTACAGCCCGAAACTGACCCTTCCTTTCCCTGGCTCTGGTATTTTGGAACCAAACTTGCACTACCCTCTTCTTCAGTCCCACCTCATGAGCGATGTGGTCAAGCATTTTACGAGTGGGGTTTGAGTCCAACAGGTATTTCTGGTAGAGGATCTCCAGCTGCTCAGGTGTGATGGTAGTCCTTAGGCGCTTGTCTCTTTGTGGCTCCTCCCCACTGTTGGTGCTGTCATTCTCTCCTGGGCTAGTGCCTGCTTTCTCCTCCAACTTCCTCTTCAGGGAGTTCATGGTGGAGGTGGGTGTTGATGGAGAGGTGGCAGAGCTGCTTGGGATCTGTGGCATAGCCCCAGAGAGGAGTTGACTGGCCAACAGGGGATTGCTAGGATCAAACAACATGAAGGGCATGTCCATTGGGCGGTCCAAGAACTGAGGGTGGATGAATTGGTTTTGTACAGAGAGGAAGTGGAGTTGCTGGTGTTCCTGCCAGTGCTCAAAGGTTGGGAAGCCAAGCTTGCACTGCTCACACTGGTATTGAATCATTTGCTGTGCCAGCTGTTGCTGTGATGCAGAGCTCATGTGAGGGTTGAGGCCCATGTGGGAGCTCTGAGAAGCTCTCTCAGCCTGGCTTGTCTGAGAGGCTGAGGGACCACACTCACGTTGCtgctgagagagggaaggagaagaatGCTTGTTTGTCTTTGGGGCTGTTTGTGGCTTTTCATCTCGTGCTTCTCTTCTCTGATGTTGAGTCTCAGATTGGGGCTGATGCACAGTCTCCTGTTTGATGGTGGTCTGATGCTCACGTGGATCTGAGGACATTTCAGCCAAATGTTTGGGCTTCTCATCATAAGAGTTTGATGTGTTAGCTGGTGAGGCTTCCTCCTTCTCAGAGGATGAGAGGTGGGAAAAAGCTgacgtggacggagggagagggcaGAGGCTTGAGGAAGAAGGCATAGGGGTGTGACAGGAGGACCCAGAGGGGGTGTAGTATTCATGAGAAAGATCCATAGAGTCCTCGTTTTGGCTGTCGTATTGCCCGTCATCGTCTTCATCTTTGTAACACAGCTTCTTTTGGTGCTTTATGAGGTCAAATATACGCTGGAAAACCAGACTGCATTTCTTGCACTGGTAGTTCAGGTTGGTGGTGCGAATGTAACGGTCATTGGACAGCTCTCTTCGTTCACCATCTTTGCTTCCATCCCCCTGGTTTTCATAATTCTTGCGTGCCTTCTGACGAGCATTTTGGAACCACACCACAATGACACGGGTGGGGAGGCTCAGAAGGTTGGAGAGCTGTTCAAATTCATCATCTTTGGGGTAGGCGTTAGCATCAAAGAAGTCCTGAAGCACCCGCAATTGGTAGTCTGTAAACCTTGTTCTTGAGGATCTTTTACTCCCATAACATTCCTGTCTTTGAGGCTCAGGGGAAGGGGGTTTAGAGTCAATTTTGGTATCCTCCATAGTGGTAATGGGTGGGTTGTTGAAGTTGTAGGGTGAGTCTTTGTTGCGCTGGCGCTCTTTGAAGAGGGTGTTGCGGAACCAGTGTTTGATGACTTTCTGGGGCAGCCCTGACTTATCTGCCATCTCCTTAATCTGCTCCTCATTGGGGGAGTTGTTGATGTCAAAGTACTGCCGAAGGACCCTAAGCTGGTCATCAGTGATACGTGTCCTGGGCCTCTTATTCTGCTGCTGCTGTAGCATGGCTGGTGTAAGTTGCTGTTGGTAAAGCTGGGCCAGATCATTAGCCAGTGACTGTGACTCCACAGATGACATCTGGGATTGCATTTGGGAGGGCATGGACTGTAGAGACATTGACTGCATCATGAGTGGTGAGAAGAGGGGCATATCCATTGGCATGGGAATTTGAGCCATTTGAACAGGAGGCTGCGGGGTCGACACAGTTGGGGGTGTGATGGAGGGAGCAGAGACAGGAATATTTGGTGTTGGGGCTCTCTgtggagggggtggaggtggaggaggaggaggaggaggaggtgcaggagcaggaggagcagccTCTGGTGTCTGGGGTCTGAGTGGATACAGTTTGTCATACTGCTCTCTGTATTCCTTGGCAAATCTCTCCAGGGAGCGGAATGGGAAGAAGGCCTGATGGATGTGCTCCTGATGACTCTTCAGAATCAGTATGTTGGAAAATAGTTTTCCACAGGCCTCACATTCCAGCTTCTCCAATCCCTCGATGGGGTCCACCACTCTCATGATCCCACCAGGAGTGCTTGTTCCAGCTGGTCCAGGCCCCGCTGGCTTCTTCTGAGCTTTCTGCTTGTTTTCATTGTATTGAATCACTAGCTCAAACCCAAAGTTCTCCAGAAGGGCTTTAGTGGCATTTCCACGAGCATCTGAAGCAATCCTTGGTGGAGGAAAGCCAGGATCGTGGTTGGAGTTCATTGCAGTCTGTTGCATATCCTTTTTTTCATTTGACTTGTTGTCAGAGCTGTCTTTTGTGACATGTTCCTCAATTTTCTCTCTTAATTCTTTTTCTCTTTgcatttccctttctctctcttgcttctcatTGTGGGCGGCAGCGGCCTTCTGCTTTTTCTCAGCCTGGTGAAGTAGATTGGCACTCTGCTGAAGCAAAGCCATCTGGCCCTGGGCCTGAGAATGGGCTTGGGCCTGCTGCTGTTGGTGCTGCTGCTGAAGGTGGTGGTGCATCAGCTGTTGTTGCAGGCAGCTCTGAGCCTGAGCCTGCTGGGCAGAGTTCTTCAGGTCCTCCAACAGAGAGTTGGCAGTGGAGCTTGACAGGCCAAGTGCAGAACTGTTGAGGTTCATCTCTGGATTCAGTTGGAATTCTGCTCCAGGGATGTAGAAAGGGAAGAGCAGCTGTTGTTGCTGCAGTGAGTGAAGAGCATCAGTTGTCATGGGGAAGTGCTGAAGAAGTGCTGGGTTGAAAAGCTGGGACTGGATGAGGGCAGCTTGTTGCTGGAGCTCTTGTTGGAGCTGGGCCTGGGCTTGGGCTTGGGCCTGAGCCAACTGCTGTTGCTGTtgaagctgctgctgctgctggtgctgctgtcCCCTTGCAGAGAGCATGTCTGCAAATTTCTTCTTTTTTGATTCATGGTTTTCAGATTGATGACAAGTCATCGAGGAGTTCCCAAGGCTTTCAATGCTGTGAGACTGGCTCATGTGGTTGCCTCCAAGAATAGTCTGTGTAGTCTGAGCCCCAGAAGAGCTGTGGTTGCTGGAGCTGGTTGTTGAGTTAGTAGCTGGGCTTGGGCTTGGAGTTGAAGTGTTGTTGGAGGATCCACCGCCACTTAATCCAGAACCACTGCTGGAGCTGGTGTTTCCTCCTGCTGCTTCAAGCTTGGCTGCTCGGGCCTTGGTCTGGTGGAGGACAGAGCGCATGTGGATCTCTAGAGTAGAGCTCTGGCTGTAAGCCACGTTGCAAGTGCTGCACTTGAATGGTTTGTTGTCAGGGCTGCTAGTGGGCTCTGGTTGACCAGTGGTGGACTCCTGTAGGGCCCGCTTGACCTTGTGCAGGTGTGAGACAGAGTTGTAGTGAACCAGAAGAATGTTCTTCTGTGTGAATGACTCTTTGCACACTGTGCACTTGAAAGGACGAGATGGGTCCAGGAACTTCTCCATGGTAAAGTTAGGACCTTTCCTGAATGGCAGGGCACGCTTGGGCTCTGATCCAAAATCTTCTAGCAATGAGCCAGAGTCGCTACCTGTTGGGCTTTGCTTCTCCTCTTGGTCActgtcctctccctctttgtcaTCTTCTCCCAGTCCTCCGTGGTCCTCTCCAAGTGATGGATCTCCCATGACCATAAGGTCTCCGTTCATCAGTAAGCCTCCATAGAGCTGTTGGATGTCAGCCTCGCTCAACTCTAGGTGGCTGGTCTCCAAATGTTTCTTCAAGGCCTGCAGGGTCCTGAAGCTGCGTTGACAGAGGCAGCACATGGTGGCTGCTCTGATGACGTGGTACTGCGAGTGCAGCTGCAGTTTCTCCACCGTCTTGAAGGCCAGGCTGCACTGGTTGCAGCGGTACTTGTAGACATGCCGGTCCGAGACAGGCAGCTGAGGCCTTTTGTTGTGAACCTCGTTGAAGTGCACCTGGAGGGAGTTAGAGGACTTGAAGACCTGGTTACAGCCTTTCTTCCAACACAGGAATCCTGTGTCTTCCCTTCCA

Function

symbol description
zfhx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in brain development; regulation of neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system and pharyngeal arch. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human ZFHX3 (zinc finger homeobox 3).

NR:

description
zinc finger homeobox protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU608020 True 5434 TUCP 0.52 1 67013220 67018653

Neighbor

gene id symbol gene type direction distance location
LOC110526948 LOC106562086 coding upstream 236888 66756330 ~ 66776332 (+)
LOC110526393 LOC106587180 coding upstream 259780 66748816 ~ 66753440 (+)
LOC110526947 LOC105029748 coding upstream 292779 66719808 ~ 66720441 (+)
LOC110526392 LOC106587181 coding upstream 365797 66609230 ~ 66647423 (+)
LOC110526390 LOC106587182 coding upstream 411083 66597778 ~ 66602137 (+)
LOC110526401 LOC106587347 coding downstream 509489 67528142 ~ 67544856 (+)
LOC110526949 mald3 coding downstream 625161 67643814 ~ 67644573 (+)
LOC110526406 LOC106587353 coding downstream 718157 67736810 ~ 67753397 (+)
LOC110526410 myo1e coding downstream 830621 67849274 ~ 67897779 (+)
LOC110526412 LOC106587340 coding downstream 941161 67959814 ~ 67973591 (+)
G536994 NA non-coding upstream 826 67012171 ~ 67012394 (+)
G536585 NA non-coding upstream 80665 66928565 ~ 66932555 (+)
G536409 NA non-coding upstream 361710 66648557 ~ 66651510 (+)
G536400 NA non-coding upstream 426103 66583358 ~ 66587117 (+)
G536394 NA non-coding upstream 439369 66573556 ~ 66573851 (+)
G537000 NA non-coding downstream 17976 67036629 ~ 67036990 (+)
G537004 NA non-coding downstream 21707 67040360 ~ 67040589 (+)
G537007 NA non-coding downstream 29636 67048289 ~ 67048510 (+)
G537014 NA non-coding downstream 54481 67073134 ~ 67073374 (+)
G537018 NA non-coding downstream 58832 67077485 ~ 67077711 (+)
G536406 NA other upstream 409167 66602785 ~ 66604053 (+)
G535150 LOC106587155 other upstream 1163779 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1851890 65065380 ~ 65178884 (+)
G534653 NA other upstream 1895264 65113280 ~ 65169563 (+)
G534453 NA other upstream 2166116 64790322 ~ 64847104 (+)
G537029 zfhx3 other downstream 85653 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 91023 67109676 ~ 67110628 (+)
G537606 NA other downstream 735903 67754556 ~ 67756618 (+)
G537617 atxn1l other downstream 748103 67766756 ~ 67767613 (+)
LOC110526436 LOC107688027 other downstream 1660724 68679317 ~ 68681675 (+)

Expression


Co-expression Network