Gene
RNA
| Item | Value |
|---|---|
| gene id | G537029 |
| gene name | zfhx3 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 67104306 ~ 67104908 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| zfhx3 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in brain development; regulation of neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system and pharyngeal arch. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human ZFHX3 (zinc finger homeobox 3). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU608058 | False | 557 | TUCP | 0.59 | 1 | 67104306 | 67104862 |
| TU608055 | False | 452 | TUCP | 0.62 | 1 | 67104411 | 67104862 |
| TU608056 | True | 498 | TUCP | 0.62 | 1 | 67104411 | 67104908 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526948 | LOC106562086 | coding | upstream | 327974 | 66756330 ~ 66776332 (+) |
| LOC110526393 | LOC106587180 | coding | upstream | 350866 | 66748816 ~ 66753440 (+) |
| LOC110526947 | LOC105029748 | coding | upstream | 383865 | 66719808 ~ 66720441 (+) |
| LOC110526392 | LOC106587181 | coding | upstream | 456883 | 66609230 ~ 66647423 (+) |
| LOC118965116 | NA | coding | upstream | 502537 | 66601685 ~ 66601769 (+) |
| LOC110526401 | LOC106587347 | coding | downstream | 423234 | 67528142 ~ 67544856 (+) |
| LOC110526949 | mald3 | coding | downstream | 538906 | 67643814 ~ 67644573 (+) |
| LOC110526406 | LOC106587353 | coding | downstream | 631902 | 67736810 ~ 67753397 (+) |
| LOC110526410 | myo1e | coding | downstream | 744366 | 67849274 ~ 67897779 (+) |
| LOC110526412 | LOC106587340 | coding | downstream | 854906 | 67959814 ~ 67973591 (+) |
| G537028 | NA | non-coding | upstream | 1917 | 67102182 ~ 67102389 (+) |
| G537027 | NA | non-coding | upstream | 2441 | 67101662 ~ 67101865 (+) |
| G537026 | NA | non-coding | upstream | 8702 | 67095394 ~ 67095604 (+) |
| G537023 | NA | non-coding | upstream | 12152 | 67091911 ~ 67092154 (+) |
| G537022 | NA | non-coding | upstream | 17691 | 67086377 ~ 67086615 (+) |
| G537031 | LOC106587324 | non-coding | downstream | 3904 | 67108812 ~ 67109391 (+) |
| G537035 | NA | non-coding | downstream | 12064 | 67116972 ~ 67117192 (+) |
| G537036 | NA | non-coding | downstream | 15479 | 67120387 ~ 67120795 (+) |
| G537037 | NA | non-coding | downstream | 15984 | 67120892 ~ 67121170 (+) |
| G537038 | NA | non-coding | downstream | 22289 | 67127197 ~ 67127432 (+) |
| G536995 | zfhx3 | other | upstream | 85653 | 67013220 ~ 67018653 (+) |
| G536406 | NA | other | upstream | 500253 | 66602785 ~ 66604053 (+) |
| G535150 | LOC106587155 | other | upstream | 1254865 | 65847623 ~ 65849441 (+) |
| LOC110526356 | LOC106587213 | other | upstream | 1942976 | 65065380 ~ 65178884 (+) |
| G534653 | NA | other | upstream | 1986350 | 65113280 ~ 65169563 (+) |
| G537032 | LOC106587324 | other | downstream | 4768 | 67109676 ~ 67110628 (+) |
| G537606 | NA | other | downstream | 649648 | 67754556 ~ 67756618 (+) |
| G537617 | atxn1l | other | downstream | 661848 | 67766756 ~ 67767613 (+) |
| LOC110526436 | LOC107688027 | other | downstream | 1574469 | 68679317 ~ 68681675 (+) |
| G538561 | NA | other | downstream | 1599490 | 68704398 ~ 68704696 (+) |
