G537617 (atxn1l)


Basic Information

Item Value
gene id G537617
gene name atxn1l
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67766756 ~ 67767613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU608686
TGTCTGGGGTGCTGCGCTGCCCAGGCGAAGCCCTCTCGCCCAGCCTTCGGCTCTTCAGGCTCCTGTCCTGTGCGTGCTCCAGTGCTACAGAGGCGGATGCTGCCTGCAGCAGCCTTGCATTCCTGGCATTGTAGTCCTGGAGCAtctcctgctcCCCGCTGTAGGGGTCCCTGGGGGCAGGCGCAGCCCTGGTGCCCTGAGGGTGGTAAAAGACAGGCACTCCCCGAGGACTGAGCTCTGCGGCGGGCAGCGGGCCCAGGTGCTGGGCAGCCTGTTCCGAGGTCAGCATCAGCGGGACCCCTCCGGAAGACCCCACTTTGGCAAAGGCATGGGCAGATACATGGGTCTGGGTAGGAGGGGAGACCAACCCCTCCTGGATGACTGACTGGTAGGGGACCAGGTGGGGCTGGGAGAGGGCAACTGAGGGGGAGATCAGGGTGCTGGGAACAAAGCCAGGGGGGACTGCATAAGGGACTGCACCATATGGAGAGACAAACtggaaagaggagtgggggaTCTGGGCATAGCCTAGAGGGGGATAGGAGATACCTGGATGATGCTGTAGGAGAGATGAGGGGACAGTGTAAGCTGGAGAGATATGGCTTAACACTGGGTGTAGATTGGTCTGGGAGtaggagacagaagggagagcCACCCTATAGAGCATGCTGTACTGGTCAACAGGCAGCCCTTGGAGGCCCTCAGCACTCTCTACTCCATAGTGTAGACCAGGCTGAGCATGCAGCCACTCCTCTGCTGTGCCACCTCCCTGAGTGTCACTACCGACCCCTGAGCTCTGAGTGG

Function

symbol description
atxn1l Predicted to enable DNA binding activity and RNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Located in cytoplasm. Is expressed in cerebellum. Orthologous to human ATXN1L (ataxin 1 like).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU608686 True 804 TUCP 0.61 2 67766756 67767613

Neighbor

gene id symbol gene type direction distance location
LOC110526406 LOC106587353 coding upstream 13359 67736810 ~ 67753397 (+)
LOC110526949 mald3 coding upstream 122183 67643814 ~ 67644573 (+)
LOC110526401 LOC106587347 coding upstream 221900 67528142 ~ 67544856 (+)
LOC110526948 LOC106562086 coding upstream 990424 66756330 ~ 66776332 (+)
LOC110526393 LOC106587180 coding upstream 1013316 66748816 ~ 66753440 (+)
LOC110526410 myo1e coding downstream 81661 67849274 ~ 67897779 (+)
LOC110526412 LOC106587340 coding downstream 192201 67959814 ~ 67973591 (+)
adam10a adam10 coding downstream 239415 68007028 ~ 68116406 (+)
LOC118965064 LOC106577244 coding downstream 293023 68060636 ~ 68063992 (+)
trnar-acg-5 NA coding downstream 352217 68119826 ~ 68130306 (+)
G537615 NA non-coding upstream 4720 67757125 ~ 67762036 (+)
G537612 LOC100194703 non-coding upstream 16878 67749622 ~ 67749878 (+)
G537589 NA non-coding upstream 58036 67703515 ~ 67708720 (+)
G537533 NA non-coding upstream 132166 67607254 ~ 67634590 (+)
G537529 NA non-coding upstream 135089 67600561 ~ 67631667 (+)
G537630 NA non-coding downstream 26326 67793939 ~ 67803569 (+)
G537632 LOC106587318 non-coding downstream 28462 67796075 ~ 67824783 (+)
G537635 NA non-coding downstream 45430 67813043 ~ 67830909 (+)
G537636 NA non-coding downstream 45772 67813385 ~ 67821093 (+)
G537638 NA non-coding downstream 63901 67831514 ~ 67831871 (+)
G537606 NA other upstream 10138 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 656128 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 661848 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 748103 67013220 ~ 67018653 (+)
G536406 NA other upstream 1162703 66602785 ~ 66604053 (+)
LOC110526436 LOC107688027 other downstream 911764 68679317 ~ 68681675 (+)
G538561 NA other downstream 936785 68704398 ~ 68704696 (+)
G538607 NA other downstream 1043506 68811119 ~ 68811890 (+)
G538859 NA other downstream 1138432 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 1228470 68996083 ~ 69002828 (+)

Expression


Co-expression Network