G537699 (rnf111)


Basic Information

Item Value
gene id G537699
gene name rnf111
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67940555 ~ 67941516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU608781
GCCACAGCTGCGCTGCTtggctggctgctgctgctgccgtcTACATACAGCTCGTCCTCTGCCTCTGTGGACGAGGGTGAGGATGACCCGCTGGTCAGCTCCTCGCTGGAGCTGCTGGTGCTGTGGAGCAGCGCGTACTTCCTGCGAGCGATTACCTCCCGCTTCTTCCTCTGGAGAAGTAGGCGCTCTTTCTGCTTCTGAGTCCGCTGGATGCCGCCGGACCCAGGCTTCACAATCCGCTTCCTATGCAGTGACCGCCGCCCGCTCAGGCACGGCCGCTTCAGCAGCACCGGCTGCGGTCCCCCTGCTGCTCCCGTCCCTCCagcctccacctcttcctctgaGCTCATAGTATCTGAATCCCCGAAGCGCAggctggaggagggagaggaggcacaGTCACTGAATGAGGACTCTGGGTTGCGTTCGTCCTCACTGCGTCGCTCCAAGAGATCTGGCTGGTGGCGCTGAAGGAGAAGAGAGCCCTCACTGACACGACCCTCCTTCAGGGAGCAGTCCGAGGGCCCTGGCTGTTGGCTCTTGCGCTTTTTGCGTCCAGGCTGGCCCCTGTCTGGGTCTCTGCGGGCCCCTATGTCCCTCAGGGGCCGGTGCCTGGTATCGGCACACAGTGGTGCAAACTCGCTGCCTGCCTTGCCGATCACCTCCATGTTGGCAGGGAAGCTCTTAGCCGTCTCCATGGGCTCTGGGTTGGCCAGCGGACCCTTCAGGTGCTCCTGTCTACCCTGGGCCTCAGAGGGCACCTCGCTCTTCATGCTGCCTGGTCCACGCAGACGCAATGCCAACTAAACTTCCGCTAGCTCCTATAGGTCCATTGGCGGGCCCGC

Function

symbol description
rnf111 Predicted to enable SMAD binding activity; SUMO polymer binding activity; and ubiquitin protein ligase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and prechordal plate formation. Predicted to be located in PML body. Predicted to be active in cytoplasm and nucleus. Is expressed in neuroectoderm; polster; prechordal plate; and tail bud. Orthologous to human RNF111 (ring finger protein 111).

NR:

description
E3 ubiquitin-protein ligase Arkadia-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU608781 True 845 lncRNA 0.63 2 67940555 67941516

Neighbor

gene id symbol gene type direction distance location
LOC110526410 myo1e coding upstream 42776 67849274 ~ 67897779 (+)
LOC110526406 LOC106587353 coding upstream 187158 67736810 ~ 67753397 (+)
LOC110526949 mald3 coding upstream 295982 67643814 ~ 67644573 (+)
LOC110526401 LOC106587347 coding upstream 395699 67528142 ~ 67544856 (+)
LOC110526948 LOC106562086 coding upstream 1164223 66756330 ~ 66776332 (+)
LOC110526412 LOC106587340 coding downstream 18298 67959814 ~ 67973591 (+)
adam10a adam10 coding downstream 65512 68007028 ~ 68116406 (+)
LOC118965064 LOC106577244 coding downstream 119120 68060636 ~ 68063992 (+)
trnar-acg-5 NA coding downstream 178314 68119826 ~ 68130306 (+)
aldh1a2 LOC106587345 coding downstream 223533 68165049 ~ 68188551 (+)
G537654 LOC100136691 non-coding upstream 39514 67899800 ~ 67901041 (+)
G537642 NA non-coding upstream 104984 67835301 ~ 67835571 (+)
G537640 NA non-coding upstream 106914 67833389 ~ 67833641 (+)
G537639 NA non-coding upstream 107813 67832504 ~ 67832742 (+)
G537638 NA non-coding upstream 108684 67831514 ~ 67831871 (+)
G537720 NA non-coding downstream 29809 67971325 ~ 67972779 (+)
G537721 NA non-coding downstream 40050 67981566 ~ 67982894 (+)
G537802 NA non-coding downstream 167483 68108999 ~ 68109551 (+)
G537744 NA non-coding downstream 175977 68117493 ~ 68117835 (+)
G537617 atxn1l other upstream 172942 67766756 ~ 67767613 (+)
G537606 NA other upstream 183937 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 829927 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 835647 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 921902 67013220 ~ 67018653 (+)
LOC110526436 LOC107688027 other downstream 737861 68679317 ~ 68681675 (+)
G538561 NA other downstream 762882 68704398 ~ 68704696 (+)
G538607 NA other downstream 869603 68811119 ~ 68811890 (+)
G538859 NA other downstream 964529 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 1054567 68996083 ~ 69002828 (+)

Expression


Co-expression Network