G537720


Basic Information

Item Value
gene id G537720
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67971325 ~ 67972779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU608808
aggggagcTTGTTTATCTGGCCTTTATTAAAGAGCAAAATTGGAGAAAGAGAATTGTCATGAATAGAAAAATATACCTGTTTTATTTGAGGACTAAAATGTTCACCATGGCGCCATGGGTGGTATCCGTATTTCCATACCGTCATTGTGCCATGCCGGGATATTCTGTAATACACCATAAtacctacactgaacaaaagGAGCACTATTTTCAAACCCCACTGGATCTTCTGTAATCCggaggttagcaatgctaacaagtagATGTAAAAGCCCATAGATAATGCTAACTAAATACTAAAGAGGATATTGTGTACAGTCTCTGACCTAAAGTATTTGCAGGACAGACAAACCAGCTCAGTTATACAAGTAACTAAAAAAATATCCAcaaggctcttgatccaggagaggattctctgctgttaccaagcTAAGGTTGATTTTGAATGAAGCTAAGCACTTAGCTAGATGGCTAAatagctactaaattagcaaaccaaatcACAACTGTAGcgcatttagcacattttagacagttaatAGGTATAAGATAACGAACTCGATCACCTGGCGTGTGCTACACAAGTGAGTGActcacaggtagcctagtggttagtgttggactagtaactggaaggttgcaagatcaaatccctgagctgacaaggtacaaatctgtcgatctgcccctgaacaaggcagttaacccactgttcctaggcctccattgaaaataagaatttgttcttaactgacttgttaaataaacTTTTAAAAAACAAGGCTCTGGTTGTTGTGCTTATAAACAAACACCATGTGACTGAGGAC
>TU608809
GTGGTTAAATAGTCATGACATTGTTCCAAAATGAGCCCTACAAATAGCACTGTTGGGTGATCAGAAAAGCTGTAATCAATCAACAaccaaatgtatatatttaattCACATCTGTTGATAATATCCCATTTAGAAAGGTTTGAGAATCTGTGTAAAACATCACACAACAGTTGAAAAGGAAATGGCACAAGGAAATCAAGAGTAGGTGGTCtatggagataggtgggatgggctgagagaaaCCGAGGGGTGGATTTAATCTGTAATAGTTGTGACTGAAATGAATATATATCATGTGTATCGGACTTGTCTGAGCACTATGATTTAGGCTTGGGTGGTATCCGTATTTCCATACCGTCATTGTGCCATGCCGGGATATTCTGTAATACACCATAAtacctacactgaacaaaagGAGCACTATTTTCAAACCCCACTGGATCTTCTGTAATCCggaggttagcaatgctaacaagtagATGTAAAAGCCCATAGATAATGCTAACTAAATACTAAAGAGGATATTGTGTACAGTCTCTGACCTAAAGTATTTGCAGGACAGACAAACCAGCTCAGTTATACAAGTAACTAAAAAAATATCCAcaaggctcttgatccaggagaggattctctgctgttaccaagcTAAGGTTGATTTTGAATGAAGCTAAGCACTTAGCTAGATGGCTAAatagctactaaattagcaaaccaaatcACAACTGTAGcgcatttagcacattttagacagttaatAGGTATAAGATAACGAACTCGATCACCTGGCGTGTGCTACACAAGTGAGTGActcacaggtagcctagtggttagtgttggactagtaactggaaggttgcaagatcaaatccctgagctgacaaggtacaaatctgtcgatctgcccctgaacaaggcagttaacccactgttcctaggcctccattgaaaataagaatttgttcttaactgacttgttaaataaacTTTTAAAAAACAAGGCTCTGGTTGTTGTGCTTATAAACAAACACCATGTGACTGAGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU608808 False 827 lncRNA 0.39 3 67971325 67972779
TU608809 True 1043 lncRNA 0.39 2 67971708 67972779

Neighbor

gene id symbol gene type direction distance location
LOC110526410 myo1e coding upstream 73546 67849274 ~ 67897779 (+)
LOC110526406 LOC106587353 coding upstream 217928 67736810 ~ 67753397 (+)
LOC110526949 mald3 coding upstream 326752 67643814 ~ 67644573 (+)
LOC110526401 LOC106587347 coding upstream 426469 67528142 ~ 67544856 (+)
LOC110526948 LOC106562086 coding upstream 1194993 66756330 ~ 66776332 (+)
adam10a adam10 coding downstream 34249 68007028 ~ 68116406 (+)
LOC118965064 LOC106577244 coding downstream 87857 68060636 ~ 68063992 (+)
trnar-acg-5 NA coding downstream 147051 68119826 ~ 68130306 (+)
aldh1a2 LOC106587345 coding downstream 192270 68165049 ~ 68188551 (+)
LOC110526420 LOC106587436 coding downstream 436438 68409217 ~ 68433079 (+)
G537699 rnf111 non-coding upstream 29809 67940555 ~ 67941516 (+)
G537654 LOC100136691 non-coding upstream 70284 67899800 ~ 67901041 (+)
G537642 NA non-coding upstream 135754 67835301 ~ 67835571 (+)
G537640 NA non-coding upstream 137684 67833389 ~ 67833641 (+)
G537639 NA non-coding upstream 138583 67832504 ~ 67832742 (+)
G537721 NA non-coding downstream 8787 67981566 ~ 67982894 (+)
G537802 NA non-coding downstream 136220 68108999 ~ 68109551 (+)
G537744 NA non-coding downstream 144714 68117493 ~ 68117835 (+)
G537815 NA non-coding downstream 165471 68138250 ~ 68138963 (+)
G537617 atxn1l other upstream 203712 67766756 ~ 67767613 (+)
G537606 NA other upstream 214707 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 860697 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 866417 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 952672 67013220 ~ 67018653 (+)
LOC110526436 LOC107688027 other downstream 706598 68679317 ~ 68681675 (+)
G538561 NA other downstream 731619 68704398 ~ 68704696 (+)
G538607 NA other downstream 838340 68811119 ~ 68811890 (+)
G538859 NA other downstream 933266 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 1023304 68996083 ~ 69002828 (+)

Expression


Co-expression Network