G538277


Basic Information

Item Value
gene id G538277
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68142251 ~ 68144907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU609527
atgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaaggggggcgaatactttcgcaaggcactgtataacagaAAAATGGCACCATTGTGTGTCCTACTGTCAGAGGcagactccctctctctgccatccCTCCTCAAAGCTGTCCCTGGAACGTTGGGTCCCCGGTACTTCCGAGGCCTCCAAcagcttttaaatgcaagtaaaactaagtgcatgctcttcaaccgattgctgcccgcacccttctgcccgactagcatcactactctggacggttctgacttagaatatgtggacagctacaaatacctaagtgtctggttagactgtaaactctccttccagactcacattaaagcatctccaatccaaaattaaatctagaatcggcttcctatttcgcaacaaagcctccttcactcatgctgccaaacataccctcgaaaaacggactatcctaccgatccttgactttggcgatgtcatttacaaaatagcctccaacactctactcagcaaactggatgtagtctatcacagtgccatccgttttgtcaccaaagccccatatactacccaccactgcgacctgtatgctctcgttggctggccctcactacatactcgttgccaaacccactgactccaggtaatctgtaagtctatgctaggtaaagccccgccttatctcagctcactggtcaccatagcaacacccacccttagcacgagctccagcaggtatatttcactggtcaccccgaaagccaacacttcctttgggtgcctttccttccagttctcagagcagcttaccgatcactgtacctgtatacagccaatctgtaaatagcacacccaactacctcatccccatattgttacttattgctcttttgcactccactatctctacttgcacgtcatcatctgcacatctatcactctggtgttaatgctaaattgtatttattttgcctctatggcctatttattgtctttattgccttactcttctacatttgcacacactgtacatagattttctatttggttattgactgtacgtttgtttatgtgtaactctgtgttgttgtttttgtcgcactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaattggcctacctggttaaataaaagttcaattttaagttaaaaataaataaataaatatgaggGACCTCGCTGCCAGTGCACTATAGACTTCTCTTCAGTAGATGGCGCTGTCTGATCTAATGGCCACAGTCAACAGTTTCCCAACCTGCACTTTGGGGAGCCCATGTTTGCACATATTTGTTCTATTCCAGCACTAGCACAGTACACCTGATTCAAGGGGCTGGTTGGTTAAATCACAAGCTGAATCAGGAGTGCTGGAGCTGGAATAGAACAATTGTGTGCAATGGTTGGGGGTACCCTACTGGGGTGGGAAACGTTgacattgtcacaccctgaccttagagagccgttttatttatctatttggttaggtcagggtgtgatttgggtgggcattctatgttttctatttctttgtttttgaccgagtgtggttcccaatcagaggcagctgtctatcgttgtctctgattgggaatcatacttaggcagcctttttcccatctaatgttgtgggtaattatttattttctgtgtgtgtttgtgtgcgccaaGGTTGCGTCACAATCGGTTTCtgtttacctgtttttttttgtgaaagttTCACTTTATTAAAAGATGTGGAATTACATGCACGCTGCTCCTTGGCTCatctatgacagggagtttgaagacagtgaaCGTGACAGACATACAGTATTTGACCCTCTACTTTATACTGTGTTCACACTACATCTTACCAGATGTTTCGCACACAGATGTAGAatattaatttgatcaccctgttgtagGAGAACtctcctgcaatgcaggacatttaaaacttgtagtgtatttgaagtttaaaaaggtttctaaagtttgtaatttccactttgagaTTAAAGACTGTATTACGCCCATATTTCGAAAAATGTATcaccccctacaaaaatgtccatgaattataattttCTGTTGTTGCAGGATTCCTTTCCATCTGTagcaaactgactcaaattaagatcctatgtCTATATGTTTAAATACATCCCTTAAATCTCAGACATTTTAGCAgcacacacagctgtaatcacaatGTTAAGATAGAGATGTTTAAGGGTGATAGTAGGATTTAAAGTGTATATTCCATCCACCATACATTACATCCACTGAATCTCTGTAAGGAAACTGAACGCAATAGGACCAGGTACAGTGGCACTTTCCTTTGACATCAGTAGGAAGAGCTGGCAGGGTGCCATGTCCATGAGACCTCCTCGTGTGAccccgtgtgtctgtctgtcatcaggCCTGATTATGGGATATGGTTAGTTAACCTGGCTCTGCCCATAGATTACACACCCTAATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU609527 True 2588 TUCP 0.43 2 68142251 68144907

Neighbor

gene id symbol gene type direction distance location
LOC110526950 LOC106587343 coding downstream 10732 68116813 ~ 68131519 (-)
mindy2 LOC106587341 coding downstream 139598 67973652 ~ 68002653 (-)
LOC110526411 LOC106587339 coding downstream 188615 67903147 ~ 67953636 (-)
LOC100136691 LOC100136691 coding downstream 241442 67898266 ~ 67900809 (-)
LOC118965086 LOC106587318 coding downstream 310439 67831292 ~ 67831812 (-)
LOC110526951 LOC106587321 coding upstream 89947 68234854 ~ 68257368 (-)
LOC110526418 cgnl1 coding upstream 119160 68264067 ~ 68295566 (-)
LOC110526419 tcf12 coding upstream 153258 68298165 ~ 68399974 (-)
LOC118965111 NA coding upstream 165858 68310765 ~ 68310847 (-)
LOC110526422 NA coding upstream 288238 68432656 ~ 68439524 (-)
G538199 NA non-coding downstream 127684 68013186 ~ 68014567 (-)
G538190 NA non-coding downstream 131337 68006837 ~ 68010914 (-)
G538144 myo1e non-coding downstream 260066 67880561 ~ 67882185 (-)
G538119 NA non-coding downstream 294250 67837647 ~ 67848001 (-)
G538103 NA non-coding downstream 320965 67813383 ~ 67821286 (-)
G538287 NA non-coding upstream 20630 68165537 ~ 68169289 (-)
G538297 NA non-coding upstream 47509 68192416 ~ 68192755 (-)
G538299 NA non-coding upstream 48761 68193668 ~ 68193885 (-)
G538330 NA non-coding upstream 84630 68229537 ~ 68229849 (-)
G538265 NA non-coding upstream 92716 68237623 ~ 68237906 (-)
G536630 LOC106562092 other downstream 1592277 66549367 ~ 66549974 (-)
LOC110526387 LOC106587187 other downstream 1637226 66499996 ~ 66505055 (-)
LOC110526379 LOC106587193 other downstream 1860632 66277162 ~ 66326558 (-)
G536183 NA other downstream 1865962 66262486 ~ 66276289 (-)
LOC110526365 LOC106587205 other downstream 2516279 65600097 ~ 65765382 (-)
G538460 LOC106587433 other upstream 365408 68510315 ~ 68516681 (-)
LOC110526447 LOC106587408 other upstream 662506 68807413 ~ 68816777 (-)
LOC110526455 LOC106587401 other upstream 804613 68949510 ~ 68953699 (-)
G539306 NA other upstream 857836 69002743 ~ 69005665 (-)
LOC110526462 NA other upstream 1128211 69272988 ~ 69289496 (-)

Expression


Co-expression Network