G538559


Basic Information

Item Value
gene id G538559
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68702625 ~ 68702966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU609860
AATGTCATAACTCCAAAAGGCAGAGTAAAGAAAGATTATGAACAAGAAGCAACCCGTTTCCAAACTGTATTCCTATCAGTTTTCCTTTTTCACCGGATTCAATTTGTACAGGTCGTTGGACTTCTCATGGAAGTTGAGGTCTAGAAGCTCCCTCTGTAGGTTCTCTGTAAAGCTGTCACTCTGGATGAAGTTCCTGATGATGCAGTGAGGGAAAGGGTGGCAGTCTAGCTCCAGGTCCCCTTAAGAGGAACACCAGAGGAACACTCAACGACTGGTCTACCAATATAAAAAACGTTTTAACACTAATTATGTGAATAAATGTAACATGAACTAATGTATGTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU609860 True 342 lncRNA 0.41 1 68702625 68702966

Neighbor

gene id symbol gene type direction distance location
LOC110526436 LOC107688027 coding upstream 20950 68679317 ~ 68681675 (+)
LOC110526434 cog4 coding upstream 38233 68644828 ~ 68664392 (+)
LOC110526432 LOC106587425 coding upstream 58034 68640790 ~ 68644591 (+)
LOC110526430 LOC106587426 coding upstream 62012 68627574 ~ 68640613 (+)
LOC110526427 ccpg1 coding upstream 78737 68605596 ~ 68623888 (+)
LOC110526444 LOC106587414 coding downstream 72508 68775474 ~ 68780317 (+)
LOC110526448 tha11 coding downstream 113973 68816939 ~ 68818769 (+)
LOC110526954 cmtr2 coding downstream 145705 68848671 ~ 68856233 (+)
LOC110526451 LOC106587405 coding downstream 178624 68881590 ~ 68899511 (+)
LOC110526452 LOC106587404 coding downstream 219872 68922838 ~ 68936761 (+)
G538555 NA non-coding upstream 5397 68696875 ~ 68697228 (+)
G538554 NA non-coding upstream 6715 68695707 ~ 68695910 (+)
G538507 pigb non-coding upstream 75848 68626445 ~ 68626777 (+)
G538010 NA non-coding upstream 153135 68549132 ~ 68549490 (+)
G538008 NA non-coding upstream 155149 68547156 ~ 68547476 (+)
G538562 NA non-coding downstream 1799 68704765 ~ 68705103 (+)
G538563 NA non-coding downstream 2222 68705188 ~ 68705423 (+)
G538564 NA non-coding downstream 3953 68706919 ~ 68707300 (+)
G538565 LOC106587420 non-coding downstream 4443 68707409 ~ 68709628 (+)
G538785 NA non-coding downstream 142592 68845558 ~ 68845766 (+)
G537617 atxn1l other upstream 935012 67766756 ~ 67767613 (+)
G537606 NA other upstream 946007 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 1591997 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 1597717 67104306 ~ 67104908 (+)
G538561 NA other downstream 1432 68704398 ~ 68704696 (+)
G538607 NA other downstream 108153 68811119 ~ 68811890 (+)
G538859 NA other downstream 203079 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 293117 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 308640 69007055 ~ 69018414 (+)

Expression


Co-expression Network