G538563


Basic Information

Item Value
gene id G538563
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68705188 ~ 68705423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU609864
ccgtttactatgagactcgaaattaagttaaagtgcatcttgtttccaatgattatccttgagatgtttctacaacttgattggagtccacctgtgatatattcaattgattggacatgatttggaaaggcaccccggtttatataaggtcccacagttgacagtacatgtcaaagcaaaaaccaagtcatgaggtcgaaggaattgtccgtagagctctgatacaggattgtgtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU609864 True 236 lncRNA 0.40 1 68705188 68705423

Neighbor

gene id symbol gene type direction distance location
LOC110526436 LOC107688027 coding upstream 23513 68679317 ~ 68681675 (+)
LOC110526434 cog4 coding upstream 40796 68644828 ~ 68664392 (+)
LOC110526432 LOC106587425 coding upstream 60597 68640790 ~ 68644591 (+)
LOC110526430 LOC106587426 coding upstream 64575 68627574 ~ 68640613 (+)
LOC110526427 ccpg1 coding upstream 81300 68605596 ~ 68623888 (+)
LOC110526444 LOC106587414 coding downstream 70051 68775474 ~ 68780317 (+)
LOC110526448 tha11 coding downstream 111516 68816939 ~ 68818769 (+)
LOC110526954 cmtr2 coding downstream 143248 68848671 ~ 68856233 (+)
LOC110526451 LOC106587405 coding downstream 176167 68881590 ~ 68899511 (+)
LOC110526452 LOC106587404 coding downstream 217415 68922838 ~ 68936761 (+)
G538562 NA non-coding upstream 85 68704765 ~ 68705103 (+)
G538559 NA non-coding upstream 2222 68702625 ~ 68702966 (+)
G538555 NA non-coding upstream 7960 68696875 ~ 68697228 (+)
G538554 NA non-coding upstream 9278 68695707 ~ 68695910 (+)
G538507 pigb non-coding upstream 78411 68626445 ~ 68626777 (+)
G538564 NA non-coding downstream 1496 68706919 ~ 68707300 (+)
G538565 LOC106587420 non-coding downstream 1986 68707409 ~ 68709628 (+)
G538785 NA non-coding downstream 140135 68845558 ~ 68845766 (+)
G538788 NA non-coding downstream 142617 68848040 ~ 68848328 (+)
G538799 NA non-coding downstream 153868 68859291 ~ 68859533 (+)
G538561 NA other upstream 492 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 937575 67766756 ~ 67767613 (+)
G537606 NA other upstream 948570 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 1594560 67109676 ~ 67110628 (+)
G538607 NA other downstream 105696 68811119 ~ 68811890 (+)
G538859 NA other downstream 200622 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 290660 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 306183 69007055 ~ 69018414 (+)
G539068 NA other downstream 656218 69361641 ~ 69367642 (+)

Expression


Co-expression Network