G538565 (LOC106587420)


Basic Information

Item Value
gene id G538565
gene name LOC106587420
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68707409 ~ 68709628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU609868
tatttttttaaagaaaaagaaATAGCATGACAGTAATACAGGTTAAAACACAACAGGAAACTCAATGCTGTTGTTTCTTTAATCAAATAAATGTATTCTGTTGCAAGAGCATAACATCTGATTCTTGAGACACTGGGTTGCAGTTTAATCATGTAAGAAATTACAGATTTTTTTCAGATCCAAACAAAAAGTCTGACATATTTTCTTCCATCATTGTAAAGAGCACATTTACGGCCCCTTCTCTTGAGATGGTGGGTTTTTTGTTCAGCCTTACCAGGAAGCCAGAGGTGAGTAGCCTTGTGTTGCTTATTTTGATTGCCCCACATTGTATTAATTCCACGCCATGTCTTCATTTCACCCATATATGGCTGCACTCACAGAGACAGCCAGCCACTGTGCCCATTCTCACACCATTTAGTTGTAGATAAAGTTGAACCTGCTTAGTAGTTGCGGTAGGCTGGATATGATTGGCCCATAGCCGGGGGCGTTGTCATAAAGCTCAAACAGAGGGGCTGCCACCAGTTTGTAGTTCTTTGGGACTGCAAACAGAGCTTTTTCCTGCAGTTGAACCAGGAAGAGCTTTTTATGCTCCTTGGGTTTAGTGATGTGGGCTGGAATGTAGGGATACTGTGGGGGTTCAAAGTTGGGGCGCCACCAGTTTCCGATGGAGTCATCGATCACCCAATCCTGCTTCACCCCGTCCTGCCGGCCCAGGATCTCTGTCATCAGGCGTTTCAGCCCATCCACCTCATCCTCCCCTGGGCTCAGCTCTCCACCTGGCCTGCAAGAGACAAATAGACAACCCTATAAGAGAACCATAcaaacatacatgcacacactttaaaaacaaacagactgtTGATGTAACTCCTGCAGGCTGTGCTTGGTTGGTAGTAGTGCTTACAGTTTGAAGAAGGTGGTTCCCAGCTGCAACAGCAGTACATGGGGCAACCTGTGCTCATGGACAATAAGCACTCCTTCCACCGCCCTCCGCATGCCCAGCTTGTCAAACTCCTCCCGCATCCTCTGGAACCGTGCTGCCACTGAACTGTCCTTCTCATACAGAGGCTCCTTGGTCCCAAATGTGTAGTTGGTGAGAGGGTATCTGAAACAATGTCATGAATACCATTTTTAAATGTGCACATGCCTCGACTAACATGCACACACTACCCAGAACAAgcggttggtggcaccttaattggggagaagggctcgtggtaat

Function

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU609868 True 1222 lncRNA 0.46 5 68707409 68709628

Neighbor

gene id symbol gene type direction distance location
LOC110526436 LOC107688027 coding upstream 25734 68679317 ~ 68681675 (+)
LOC110526434 cog4 coding upstream 43017 68644828 ~ 68664392 (+)
LOC110526432 LOC106587425 coding upstream 62818 68640790 ~ 68644591 (+)
LOC110526430 LOC106587426 coding upstream 66796 68627574 ~ 68640613 (+)
LOC110526427 ccpg1 coding upstream 83521 68605596 ~ 68623888 (+)
LOC110526444 LOC106587414 coding downstream 65846 68775474 ~ 68780317 (+)
LOC110526448 tha11 coding downstream 107311 68816939 ~ 68818769 (+)
LOC110526954 cmtr2 coding downstream 139043 68848671 ~ 68856233 (+)
LOC110526451 LOC106587405 coding downstream 171962 68881590 ~ 68899511 (+)
LOC110526452 LOC106587404 coding downstream 213210 68922838 ~ 68936761 (+)
G538564 NA non-coding upstream 109 68706919 ~ 68707300 (+)
G538563 NA non-coding upstream 1986 68705188 ~ 68705423 (+)
G538562 NA non-coding upstream 2306 68704765 ~ 68705103 (+)
G538559 NA non-coding upstream 4443 68702625 ~ 68702966 (+)
G538555 NA non-coding upstream 10181 68696875 ~ 68697228 (+)
G538785 NA non-coding downstream 135930 68845558 ~ 68845766 (+)
G538788 NA non-coding downstream 138412 68848040 ~ 68848328 (+)
G538799 NA non-coding downstream 149663 68859291 ~ 68859533 (+)
G538851 NA non-coding downstream 191167 68900795 ~ 68901024 (+)
G538852 NA non-coding downstream 192753 68902381 ~ 68903425 (+)
G538561 NA other upstream 2713 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 939796 67766756 ~ 67767613 (+)
G537606 NA other upstream 950791 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 1596781 67109676 ~ 67110628 (+)
G538607 NA other downstream 101491 68811119 ~ 68811890 (+)
G538859 NA other downstream 196417 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 286455 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 301978 69007055 ~ 69018414 (+)
G539068 NA other downstream 652013 69361641 ~ 69367642 (+)

Expression


Co-expression Network