G538788


Basic Information

Item Value
gene id G538788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68848040 ~ 68848328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610155
AATGTGAAACTTGGTTATGTTCGCTGTAAGAGCTTTCTTCCCCAAACCATTGCAGTGTAAAAATTGCAAAGAATTTGGCCAAGTTTCAAGTTTGTGCAGATGGATGGAGTATATTGAAGAATGGTGTGTAGAAGGACAATGGTGTTGCAATTGTGGTGGGGATCATGATCCCGAGTTCCTGGAGTGTCCTGTAAGGGTGAAAGAGATTGAGGTGGCAAAGGTTAGAGTGGTCAATCGAATCTCCTATGTGGAGGCAATTAAAAGAGTTGAGGTTTGGTTGGAGAAAAGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC109113811

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610155 True 289 lncRNA 0.43 1 68848040 68848328

Neighbor

gene id symbol gene type direction distance location
LOC110526448 tha11 coding upstream 29271 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 67723 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 166365 68679317 ~ 68681675 (+)
LOC110526434 cog4 coding upstream 183648 68644828 ~ 68664392 (+)
LOC110526432 LOC106587425 coding upstream 203449 68640790 ~ 68644591 (+)
LOC110526954 cmtr2 coding downstream 343 68848671 ~ 68856233 (+)
LOC110526451 LOC106587405 coding downstream 33262 68881590 ~ 68899511 (+)
LOC110526452 LOC106587404 coding downstream 74510 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 90314 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 106937 68955265 ~ 68955385 (+)
G538785 NA non-coding upstream 2274 68845558 ~ 68845766 (+)
G538565 LOC106587420 non-coding upstream 138412 68707409 ~ 68709628 (+)
G538564 NA non-coding upstream 140740 68706919 ~ 68707300 (+)
G538563 NA non-coding upstream 142617 68705188 ~ 68705423 (+)
G538562 NA non-coding upstream 142937 68704765 ~ 68705103 (+)
G538799 NA non-coding downstream 10963 68859291 ~ 68859533 (+)
G538851 NA non-coding downstream 52467 68900795 ~ 68901024 (+)
G538852 NA non-coding downstream 54053 68902381 ~ 68903425 (+)
G538856 NA non-coding downstream 56215 68904543 ~ 68904854 (+)
G538857 NA non-coding downstream 56828 68905156 ~ 68905406 (+)
G538607 NA other upstream 36150 68811119 ~ 68811890 (+)
G538561 NA other upstream 143344 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1080427 67766756 ~ 67767613 (+)
G537606 NA other upstream 1091422 67754556 ~ 67756618 (+)
G538859 NA other downstream 57717 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 147755 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 163278 69007055 ~ 69018414 (+)
G539068 NA other downstream 513313 69361641 ~ 69367642 (+)
G539959 NA other downstream 1168014 70015270 ~ 70019477 (+)

Expression


Co-expression Network