G538799


Basic Information

Item Value
gene id G538799
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68859291 ~ 68859533 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610167
caggtagcgatcggttgaagagcatgcatttagttttacttgtatttaagagcaattggaggccacggaaagagagttgtatggcattgaagcttgcctggagggttgttaacacagtgtccaaagaagggccagaagtatacagaatggtgtcgtctgcgtagaggtggatcagagactcaccagcagcaagagcgacctcattgatgtatacagagaagagagtcggtccaagaattgaac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610167 True 243 lncRNA 0.47 1 68859291 68859533

Neighbor

gene id symbol gene type direction distance location
LOC110526954 cmtr2 coding upstream 3058 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 40522 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 78974 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 177616 68679317 ~ 68681675 (+)
LOC110526434 cog4 coding upstream 194899 68644828 ~ 68664392 (+)
LOC110526451 LOC106587405 coding downstream 22057 68881590 ~ 68899511 (+)
LOC110526452 LOC106587404 coding downstream 63305 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 79109 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 95732 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 105522 68965055 ~ 68977010 (+)
G538788 NA non-coding upstream 10963 68848040 ~ 68848328 (+)
G538785 NA non-coding upstream 13525 68845558 ~ 68845766 (+)
G538565 LOC106587420 non-coding upstream 149663 68707409 ~ 68709628 (+)
G538564 NA non-coding upstream 151991 68706919 ~ 68707300 (+)
G538563 NA non-coding upstream 153868 68705188 ~ 68705423 (+)
G538851 NA non-coding downstream 41262 68900795 ~ 68901024 (+)
G538852 NA non-coding downstream 42848 68902381 ~ 68903425 (+)
G538856 NA non-coding downstream 45010 68904543 ~ 68904854 (+)
G538857 NA non-coding downstream 45623 68905156 ~ 68905406 (+)
G538858 NA non-coding downstream 46085 68905618 ~ 68905910 (+)
G538607 NA other upstream 47401 68811119 ~ 68811890 (+)
G538561 NA other upstream 154595 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1091678 67766756 ~ 67767613 (+)
G537606 NA other upstream 1102673 67754556 ~ 67756618 (+)
G538859 NA other downstream 46512 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 136550 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 152073 69007055 ~ 69018414 (+)
G539068 NA other downstream 502108 69361641 ~ 69367642 (+)
G539959 NA other downstream 1156809 70015270 ~ 70019477 (+)

Expression


Co-expression Network