G538851


Basic Information

Item Value
gene id G538851
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68900795 ~ 68901024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610226
CAGATGTTAATAACAGAAAACGTCTGATGCTCCTCTGTctcaaacacaccaaaacagctTCAGCTGAGTCAGAGGATGAGGCAAGGTTGCAGCCTCGGTGCACAAACACATTTAAGAGTTATCGGCACACCGAGTAGAAAAGTTGAATCTTTTTAGAAATGAGTTTGGGTTTATAAAGTCTGCTGTCTTTTTGGTCcagtacagacacagacacagccacgcatacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610226 True 230 lncRNA 0.43 1 68900795 68901024

Neighbor

gene id symbol gene type direction distance location
LOC110526451 LOC106587405 coding upstream 1284 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 44562 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 82026 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 120478 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 219120 68679317 ~ 68681675 (+)
LOC110526452 LOC106587404 coding downstream 21814 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 37618 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 54241 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 64031 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 77873 68978897 ~ 68988139 (+)
G538799 NA non-coding upstream 41262 68859291 ~ 68859533 (+)
G538788 NA non-coding upstream 52467 68848040 ~ 68848328 (+)
G538785 NA non-coding upstream 55029 68845558 ~ 68845766 (+)
G538565 LOC106587420 non-coding upstream 191167 68707409 ~ 68709628 (+)
G538564 NA non-coding upstream 193495 68706919 ~ 68707300 (+)
G538852 NA non-coding downstream 1357 68902381 ~ 68903425 (+)
G538856 NA non-coding downstream 3519 68904543 ~ 68904854 (+)
G538857 NA non-coding downstream 4132 68905156 ~ 68905406 (+)
G538858 NA non-coding downstream 4594 68905618 ~ 68905910 (+)
G538863 NA non-coding downstream 9570 68910594 ~ 68910832 (+)
G538607 NA other upstream 88905 68811119 ~ 68811890 (+)
G538561 NA other upstream 196099 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1133182 67766756 ~ 67767613 (+)
G537606 NA other upstream 1144177 67754556 ~ 67756618 (+)
G538859 NA other downstream 5021 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 95059 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 110582 69007055 ~ 69018414 (+)
G539068 NA other downstream 460617 69361641 ~ 69367642 (+)
G539959 NA other downstream 1115318 70015270 ~ 70019477 (+)

Expression


Co-expression Network