G538852


Basic Information

Item Value
gene id G538852
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68902381 ~ 68903425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610228
tgtgggttTTATGAAAGCCTGTCTGACATGGTGCTCAAGGAAAGGGGAGGCTTTCAAATGTCACTCAGCATTACAGTCAGTAACACCTCTCTCTAAACATTTCCTCCTgcttctatccctctctgtctctgtcactcctcctccactgtctATTCATTTATtgtttcttcctctcttcctctcatttcTTCCTTCtatttctctgtcactctctgtccctccctcttcaattcttctttcttctccctctctccaccctgtcCTGTCATCAGCTACTCCCCTGAGGAACTGCTACAGCAGACCTCCATTCCTGTAAAGACTGTGTCTTTCATCCCAGAGCAAATACACACAGCCACAACATGCTTCTAAGCAGTGGTGTagagtacttaagtaaaaatactttaaagtactacttaagtcgtttttggggggtatctgtattttactttactatatatatatttggactacttttacttttacttcactacattcctaaagaaaataatgtactttttactccatacattttcccagacatccaaaagtactcgttacaatttgaatgcttagcaggactggaaaatggtccaattcccgcaattatcaacagaacatccctggtcattcctactgcctctgatctggtcgGACTCACATGCTAATcgaacagggttatattggtgattccccttgccactttattgttaagccaatgggtttttggtttgagtttgtcttgccttcacctactcaacatggcatcttattggctggtttgcgtagcttgcttacgaggggggatgttccagttagaatcgtcccagtgaacaagcaccaaaccagcggtaagttgttggttgcaaagcactgtacatcaaaagtgatttttatactctcaagtgatggtttaaatgtacaatttatataaaattgtttgtaaatgttattcgaacatcacacataagatgcagcggttttgggagaatatttgttgtgcattttgttgtaaagAATTCCCGcagtactagctagcaacttactg
>TU610230
AGGAAAGGGGAGGCTTTCAAATGTCACTCAGCATTACAGTCAGTAACACCTCTCTCTAAACATTTCCTCCTgcttctatccctctctgtctctgtcactcctcctccactgtctATTCATTTATtgtttcttcctctcttcctctcatttcTTCCTTCtatttctctgtcactctctgtccctccctcttcaattcttctttcttctccctctctccaccctgtcCTGTCATCAGCTACTCCCCTGAGGAACTGCTACAGCAGACCTCCATTCCTGTAAAGACTGTGTCTTTCATCCCAGAGCAAATACACACAGCCACAACATGCTTCTAAGCAGTGGTGTagagtacttaagtaaaaatactttaaagtactacttaagtcgtttttggggggtatctgtattttactttactatatatatatttggactacttttacttttacttcactacattcctaaagaaaataatgtactttttactccatacattttcccagacatccaaaagtactcgttacaatttgaatgcttagcaggactggaaaatggtccaattcccgcaattatcaacagaacatccctggtcattcctactgcctctgatctggtcgGACTCACATGCTAATcgaacagggttatattggtgattccccttgccactttattgttaagccaatgggtttttggtttgagtttgtcttgccttcacctactcaacatggcatcttattggctggtttgcgtagcttgcttacgaggggggatgttccagttagaatcgtcccagtgaacaagcaccaaaccagcggtaagttgttggttgcaaagcactgtacatcaaaagtgatttttatactctcaagtgatggtttaaatgtacaatttatataaaattgtttgtaaatgttattcgaacatcacacataagatgcagcggttttgggagaatatttgttgtgcattttgttgtaaagAATTCCCGcagtactagctagcaacttactg
>TU610229
TTCtatttctctgtcactctctgtccctccctcttcaattcttctttcttctccctctctccaccctgtcCTGTCATCAGCTACTCCCCTGAGGAACTGCTACAGCAGACCTCCATTCCTGTAAAGACTGTGTCTTTCATCCCAGAGCAAATACACACAGCCACAACATGCTTCTAAGCAGTGGTGTagagtacttaagtaaaaatactttaaagtactacttaagtcgtttttggggggtatctgtattttactttactatatatatatttggactacttttacttttacttcactacattcctaaagaaaataatgtactttttactccatacattttcccagacatccaaaagtactcgttacaatttgaatgcttagcaggactggaaaatggtccaattcccgcaattatcaacagaacatccctggtcattcctactgcctctgatctggtcgGACTCACATGCTAATcgaacagggttatattggtgattccccttgccactttattgttaagccaatgggtttttggtttgagtttgtcttgccttcacctactcaacatggcatcttattggctggtttgcgtagcttgcttacgaggggggatgttccagttagaatcgtcccagtgaacaagcaccaaaccagcggtaagttgttggttgcaaagcactgtacatcaaaagtgatttttatactctcaagtgatggtttaaatgtacaatttatataaaattgtttgtaaatgttattcgaacatcacacataagatgcagcggttttgggagaatatttgttgtgcattttgttgtaaagAATTCCCGcagtactagctagcaacttactg

Function

NR:

description
hypothetical protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610228 False 1045 lncRNA 0.41 1 68902381 68903425
TU610230 False 1008 lncRNA 0.40 1 68902418 68903425
TU610229 True 853 lncRNA 0.40 1 68902573 68903425

Neighbor

gene id symbol gene type direction distance location
LOC110526451 LOC106587405 coding upstream 2870 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 46148 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 83612 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 122064 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 220706 68679317 ~ 68681675 (+)
LOC110526452 LOC106587404 coding downstream 19413 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 35217 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 51840 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 61630 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 75472 68978897 ~ 68988139 (+)
G538851 NA non-coding upstream 1357 68900795 ~ 68901024 (+)
G538799 NA non-coding upstream 42848 68859291 ~ 68859533 (+)
G538788 NA non-coding upstream 54053 68848040 ~ 68848328 (+)
G538785 NA non-coding upstream 56615 68845558 ~ 68845766 (+)
G538565 LOC106587420 non-coding upstream 192753 68707409 ~ 68709628 (+)
G538856 NA non-coding downstream 1118 68904543 ~ 68904854 (+)
G538857 NA non-coding downstream 1731 68905156 ~ 68905406 (+)
G538858 NA non-coding downstream 2193 68905618 ~ 68905910 (+)
G538863 NA non-coding downstream 7169 68910594 ~ 68910832 (+)
G538864 NA non-coding downstream 7796 68911221 ~ 68911537 (+)
G538607 NA other upstream 90491 68811119 ~ 68811890 (+)
G538561 NA other upstream 197685 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1134768 67766756 ~ 67767613 (+)
G537606 NA other upstream 1145763 67754556 ~ 67756618 (+)
G538859 NA other downstream 2620 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 92658 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 108181 69007055 ~ 69018414 (+)
G539068 NA other downstream 458216 69361641 ~ 69367642 (+)
G539959 NA other downstream 1112917 70015270 ~ 70019477 (+)

Expression


Co-expression Network