G538856


Basic Information

Item Value
gene id G538856
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68904543 ~ 68904854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610237
GAACAACTGTTCCACTTAAgacaggggacgaggagcgcgcaggattTTGCATTGGACTTCCAGACCCTGGCCGCCAACGCGGGACGGAACAACAGTGCCCTGATCGATCACTACCGGTGCAGTCTgagcgaggacgtccgtcggggaTTTGGCCTgccgagacaccaccctcacattggaccagctggtggacctgtccatccggctggacaacctgctgccCGCGGACGTCCGGATTGGGGCCtgtcagttccatcccccagcacctccactccgacgcccatggagctgggaggtgctgcactTAGGGCG

Function

NR:

description
growth/differentiation factor 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610237 True 312 lncRNA 0.63 1 68904543 68904854

Neighbor

gene id symbol gene type direction distance location
LOC110526451 LOC106587405 coding upstream 5032 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 48310 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 85774 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 124226 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 222868 68679317 ~ 68681675 (+)
LOC110526452 LOC106587404 coding downstream 17984 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 33788 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 50411 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 60201 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 74043 68978897 ~ 68988139 (+)
G538852 NA non-coding upstream 1118 68902381 ~ 68903425 (+)
G538851 NA non-coding upstream 3519 68900795 ~ 68901024 (+)
G538799 NA non-coding upstream 45010 68859291 ~ 68859533 (+)
G538788 NA non-coding upstream 56215 68848040 ~ 68848328 (+)
G538785 NA non-coding upstream 58777 68845558 ~ 68845766 (+)
G538857 NA non-coding downstream 302 68905156 ~ 68905406 (+)
G538858 NA non-coding downstream 764 68905618 ~ 68905910 (+)
G538863 NA non-coding downstream 5740 68910594 ~ 68910832 (+)
G538864 NA non-coding downstream 6367 68911221 ~ 68911537 (+)
G538867 NA non-coding downstream 8919 68913773 ~ 68914036 (+)
G538607 NA other upstream 92653 68811119 ~ 68811890 (+)
G538561 NA other upstream 199847 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1136930 67766756 ~ 67767613 (+)
G537606 NA other upstream 1147925 67754556 ~ 67756618 (+)
G538859 NA other downstream 1191 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 91229 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 106752 69007055 ~ 69018414 (+)
G539068 NA other downstream 456787 69361641 ~ 69367642 (+)
G539959 NA other downstream 1111488 70015270 ~ 70019477 (+)

Expression


Co-expression Network