G538857


Basic Information

Item Value
gene id G538857
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68905156 ~ 68905406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610238
CTTCCCTGTGCACgccctagatagtcgaccattagggtcagggctgattagggaggccaccaCTCCACTAGAcatggttacgcaggagggtcataaggagagaatcagtcacttccttattgattctcctgtgtTTCCCGTGtttctccttcctagggtaccgcatttccacttcaggggtggagatggagagtgaccgcatttcagccgtgcgtaattggccgactcccaccacggtaaaggaagtgcag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610238 True 251 lncRNA 0.53 1 68905156 68905406

Neighbor

gene id symbol gene type direction distance location
LOC110526451 LOC106587405 coding upstream 5645 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 48923 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 86387 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 124839 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 223481 68679317 ~ 68681675 (+)
LOC110526452 LOC106587404 coding downstream 17432 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 33236 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 49859 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 59649 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 73491 68978897 ~ 68988139 (+)
G538856 NA non-coding upstream 302 68904543 ~ 68904854 (+)
G538852 NA non-coding upstream 1731 68902381 ~ 68903425 (+)
G538851 NA non-coding upstream 4132 68900795 ~ 68901024 (+)
G538799 NA non-coding upstream 45623 68859291 ~ 68859533 (+)
G538788 NA non-coding upstream 56828 68848040 ~ 68848328 (+)
G538858 NA non-coding downstream 212 68905618 ~ 68905910 (+)
G538863 NA non-coding downstream 5188 68910594 ~ 68910832 (+)
G538864 NA non-coding downstream 5815 68911221 ~ 68911537 (+)
G538867 NA non-coding downstream 8367 68913773 ~ 68914036 (+)
G538869 NA non-coding downstream 10650 68916056 ~ 68916300 (+)
G538607 NA other upstream 93266 68811119 ~ 68811890 (+)
G538561 NA other upstream 200460 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1137543 67766756 ~ 67767613 (+)
G537606 NA other upstream 1148538 67754556 ~ 67756618 (+)
G538859 NA other downstream 639 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 90677 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 106200 69007055 ~ 69018414 (+)
G539068 NA other downstream 456235 69361641 ~ 69367642 (+)
G539959 NA other downstream 1110936 70015270 ~ 70019477 (+)

Expression


Co-expression Network