G538863


Basic Information

Item Value
gene id G538863
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68910594 ~ 68910832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610244
gtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggcttcacgcaagatctcaccccgtggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacgggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgcca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610244 True 239 lncRNA 0.51 1 68910594 68910832

Neighbor

gene id symbol gene type direction distance location
LOC110526451 LOC106587405 coding upstream 11083 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 54361 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 91825 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 130277 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 228919 68679317 ~ 68681675 (+)
LOC110526452 LOC106587404 coding downstream 12006 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 27810 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 44433 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 54223 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 68065 68978897 ~ 68988139 (+)
G538858 NA non-coding upstream 4684 68905618 ~ 68905910 (+)
G538857 NA non-coding upstream 5188 68905156 ~ 68905406 (+)
G538856 NA non-coding upstream 5740 68904543 ~ 68904854 (+)
G538852 NA non-coding upstream 7169 68902381 ~ 68903425 (+)
G538851 NA non-coding upstream 9570 68900795 ~ 68901024 (+)
G538864 NA non-coding downstream 389 68911221 ~ 68911537 (+)
G538867 NA non-coding downstream 2941 68913773 ~ 68914036 (+)
G538869 NA non-coding downstream 5224 68916056 ~ 68916300 (+)
G538906 NA non-coding downstream 50383 68961215 ~ 68961454 (+)
G538907 NA non-coding downstream 50833 68961665 ~ 68961869 (+)
G538859 NA other upstream 3747 68906045 ~ 68906847 (+)
G538607 NA other upstream 98704 68811119 ~ 68811890 (+)
G538561 NA other upstream 205898 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1142981 67766756 ~ 67767613 (+)
G538877 LOC106582599 other downstream 85251 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 100774 69007055 ~ 69018414 (+)
G539068 NA other downstream 450809 69361641 ~ 69367642 (+)
G539959 NA other downstream 1105510 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1125362 70036194 ~ 70039507 (+)

Expression


Co-expression Network