G538864


Basic Information

Item Value
gene id G538864
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68911221 ~ 68911537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610245
gaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagttttcagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggctaaaatgccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaaggctatataacaaagtattgagataaacttttgttcttgaccaaatacttatttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610245 True 317 lncRNA 0.44 1 68911221 68911537

Neighbor

gene id symbol gene type direction distance location
LOC110526451 LOC106587405 coding upstream 11710 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 54988 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 92452 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 130904 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 229546 68679317 ~ 68681675 (+)
LOC110526452 LOC106587404 coding downstream 11301 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 27105 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 43728 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 53518 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 67360 68978897 ~ 68988139 (+)
G538863 NA non-coding upstream 389 68910594 ~ 68910832 (+)
G538858 NA non-coding upstream 5311 68905618 ~ 68905910 (+)
G538857 NA non-coding upstream 5815 68905156 ~ 68905406 (+)
G538856 NA non-coding upstream 6367 68904543 ~ 68904854 (+)
G538852 NA non-coding upstream 7796 68902381 ~ 68903425 (+)
G538867 NA non-coding downstream 2236 68913773 ~ 68914036 (+)
G538869 NA non-coding downstream 4519 68916056 ~ 68916300 (+)
G538906 NA non-coding downstream 49678 68961215 ~ 68961454 (+)
G538907 NA non-coding downstream 50128 68961665 ~ 68961869 (+)
G538878 NA non-coding downstream 79301 68990838 ~ 68992839 (+)
G538859 NA other upstream 4374 68906045 ~ 68906847 (+)
G538607 NA other upstream 99331 68811119 ~ 68811890 (+)
G538561 NA other upstream 206525 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1143608 67766756 ~ 67767613 (+)
G538877 LOC106582599 other downstream 84546 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 100069 69007055 ~ 69018414 (+)
G539068 NA other downstream 450104 69361641 ~ 69367642 (+)
G539959 NA other downstream 1104805 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1124657 70036194 ~ 70039507 (+)

Expression


Co-expression Network