G538906


Basic Information

Item Value
gene id G538906
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68961215 ~ 68961454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610288
tccttatatgaactgtaactcagtaaaatctttgaaattgttacatgttgcgtttatatttttgttcagtatacttacCCATGAATGTGCACTGTTGAAAATAAATCTCCACTCAATGTTATTGCTAGCACTTGCCACCAAAATAAAGTGTACCTTCTGGGGTAACTTGGTCATccgagatgaggagatgaggagaaacACACTATTTCAAATGTAATGTTTGCCTAAGTACAATGTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610288 True 240 lncRNA 0.35 1 68961215 68961454

Neighbor

gene id symbol gene type direction distance location
LOC118965123 NA coding upstream 5830 68955265 ~ 68955385 (+)
LOC110526454 LOC106587403 coding upstream 14341 68938642 ~ 68946874 (+)
LOC110526452 LOC106587404 coding upstream 24454 68922838 ~ 68936761 (+)
LOC110526451 LOC106587405 coding upstream 61704 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 104982 68848671 ~ 68856233 (+)
LOC110526457 LOC106587399 coding downstream 3601 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 17443 68978897 ~ 68988139 (+)
LOC110526955 LOC106587395 coding downstream 45601 69007055 ~ 69018414 (+)
LOC110526458 LOC106587394 coding downstream 69428 69030882 ~ 69133616 (+)
LOC110526459 LOC106562249 coding downstream 186876 69148330 ~ 69189966 (+)
G538869 NA non-coding upstream 44915 68916056 ~ 68916300 (+)
G538867 NA non-coding upstream 47179 68913773 ~ 68914036 (+)
G538864 NA non-coding upstream 49678 68911221 ~ 68911537 (+)
G538863 NA non-coding upstream 50383 68910594 ~ 68910832 (+)
G538858 NA non-coding upstream 55305 68905618 ~ 68905910 (+)
G538907 NA non-coding downstream 211 68961665 ~ 68961869 (+)
G538878 NA non-coding downstream 29384 68990838 ~ 68992839 (+)
G538925 NA non-coding downstream 57395 69018849 ~ 69019053 (+)
G538931 NA non-coding downstream 81167 69042621 ~ 69044027 (+)
G538891 NA non-coding downstream 82616 69044070 ~ 69144935 (+)
G538859 NA other upstream 54368 68906045 ~ 68906847 (+)
G538607 NA other upstream 149325 68811119 ~ 68811890 (+)
G538561 NA other upstream 256519 68704398 ~ 68704696 (+)
LOC110526436 LOC107688027 other upstream 279563 68679317 ~ 68681675 (+)
G537617 atxn1l other upstream 1193602 67766756 ~ 67767613 (+)
G538877 LOC106582599 other downstream 34629 68996083 ~ 69002828 (+)
G539068 NA other downstream 400187 69361641 ~ 69367642 (+)
G539959 NA other downstream 1054888 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1074740 70036194 ~ 70039507 (+)

Expression


Co-expression Network