G539303 (LOC106587398)


Basic Information

Item Value
gene id G539303
gene name LOC106587398
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68986396 ~ 68988159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610752
AAACTACAAGGCACTCAATGGAGGGTACAGCATTGTTTAATGTGCTGCTTTAGTGATATTGCTTCTCAGTGAAAACTGACGGTAGTTTACCATCACTGGCTGCTCCTCAGGCGCACTCCTAGACGGTAGGGTTTTTGCGCCTGTGCAAGGCCAAAAACCTTGCGGAAGTCGGGCGCACCTTCTTGTTCAGGCCAGACAAATTGGAAACGTCGAAGCAAGGTCACCAGTATCAGAAAGAGCTCCATGCGCGCTAACCCTTCTCCCAGGCATACACGAGcctgctGAGAATGGCAGAAAGGCCTCTGGTTTCACAAATTCACCGTCCTCATTGAGGAAGTTGTCAGGGTTGAACTCCTGCGGGAACTTCCACTGGCCCTCTTCATGGAGCACAGAGGACAAGTTAGGAATCACCATTGTGCCCTAGAACCAAAGAGGAAAGCGTAGTTAGGGTGAGAACTGGAGAAAGAGataattaatccacagataaaagggtaaaccgagtttgtttc
>TU610753
AAACTACAAGGCACTCAATGGAGGGTACAGCATTGTTTAATGTGCTGCTTTAGTGATATTGCTTCTCAGTGAAAACTGACGGTAGTTTACCATCACTGGCTGCTCCTCAGGCGCACTCCTAGACGGTAGGGTTTTTGCGCCTGTGCAAGGCCAAAAACCTTGCGGAAGTCGGGCGCACCTTCTTGTTCAGGCCAGACAAATTGGAAACGTCGAAGCAAGGTCACCAGTATCAGAAAGAGCTCCATGCGCGCTAACCCTTCTCCCAGGCATACACGAGAGCctgctGAGAATGGCAGAAAGGCCTCTGGTTTCACAAATTCACCGTCCTCATTGAGGAAGTTGTCAGGGTTGAACTCCTGCGGGAACTTCCACTGGCCCTCTTCATGGAGCACAGAGGACAAGTTAGGAATCACCATTGTGCCCTAGAACCAAAGAGGAAAGCGTAGTTAGGGTGAGAACTGGAGAAAGAGataattaatccacagataaaagggtaaaccgagtttgtttc

Function

NR:

description
vitamin D(3) 25-hydroxylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610752 False 509 lncRNA 0.49 2 68986396 68988159
TU610753 True 511 lncRNA 0.49 2 68986396 68988159

Neighbor

gene id symbol gene type direction distance location
LOC110526455 LOC106587401 coding downstream 32697 68949510 ~ 68953699 (-)
LOC110526450 dnaaf1 coding downstream 156640 68827577 ~ 68829756 (-)
LOC110526447 LOC106587408 coding downstream 169619 68807413 ~ 68816777 (-)
LOC110526446 LOC106587411 coding downstream 193702 68786733 ~ 68792694 (-)
LOC110526445 LOC106587410 coding downstream 200513 68782240 ~ 68785883 (-)
LOC110526956 NA coding upstream 30502 69018661 ~ 69020716 (-)
LOC118964924 LOC106562250 coding upstream 259465 69125027 ~ 69272291 (-)
LOC110526462 NA coding upstream 284829 69272988 ~ 69289496 (-)
trnar-acg-6 NA coding upstream 312983 69301142 ~ 69301214 (-)
LOC110526463 LOC106587389 coding upstream 317414 69305573 ~ 69317496 (-)
G539305 NA non-coding downstream 6848 68978918 ~ 68979548 (-)
G539317 NA non-coding downstream 25434 68956213 ~ 68960962 (-)
G539287 NA non-coding downstream 75569 68910594 ~ 68910827 (-)
G538848 NA non-coding downstream 87962 68894988 ~ 68898434 (-)
G538800 NA non-coding downstream 126907 68859232 ~ 68859489 (-)
G539307 NA non-coding upstream 2740 68990899 ~ 68993434 (-)
G539331 NA non-coding upstream 6582 68994741 ~ 68995304 (-)
G539332 NA non-coding upstream 7235 68995394 ~ 68995655 (-)
G539335 NA non-coding upstream 19412 69007571 ~ 69007823 (-)
G539355 NA non-coding upstream 66274 69054433 ~ 69055722 (-)
G538460 LOC106587433 other downstream 469715 68510315 ~ 68516681 (-)
G538277 NA other downstream 841489 68142251 ~ 68144907 (-)
G536630 LOC106562092 other downstream 2436422 66549367 ~ 66549974 (-)
G539306 NA other upstream 14584 69002743 ~ 69005665 (-)
G539674 LOC106587381 other upstream 627595 69615754 ~ 69616671 (-)
G539714 NA other upstream 700748 69688907 ~ 69690015 (-)
G540376 NA other upstream 1115639 70103798 ~ 70107175 (-)

Expression


Co-expression Network