G538878


Basic Information

Item Value
gene id G538878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68990838 ~ 68992839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610259
ATGTTGTTAAAAACAGTAATAAAGTGATTTAGAGCCGATTCAGAATCTGGTATGGCTTAGATACTATTAAGATCACCATTGAGATCATGTAAAAatgctttacatttttttaatttctCCTTGTAATGAAGCATTGTTTTGCACTATGAGTCCTAACATCTCTAATACAAAAAAATAGGACAGTGATCACTAATATCCAGGGAGGAAACATCACTAGCCACACATTTCTCTGGAGTATTTGTAAACATAAGATCAATTAATGTTGATTTAGTAGAATCTCTCAGATTTGGACATGTGGGTTTGGTAATCAACTGTGAGGTTTAGGTTGTTACAAAAATCCTTTAAATAGTCGGAGTCTTGGGTTCCCCAGGACAGGTTAAAGTCACCTATGACAAACTATTCAGAAGTAGACAAATAAGCTATTAAGTCAGTGAGACTAATTAACAAACATTTCTTAGCAGGGGAGGGCGGTAGACTCCCAGAACAGTTACTTTAGAATTACAACTTAGTTGAAGACTTAAATTCAGATTGTTTAGGACTCGCCTTTAAAAGAGacatagaaaggatatttttgtATAGATAGCAACACCACTTTTGCCCATCCTATCAGCCCTGAAACTTGAAAACCATCAATAGTAACCTCAGAATCCACAATTTTCTCAGATAACCATGTTTCTGATAAACAAAAAATATCTGGATCTGCCTGCGAAGCCCAGATCTTGATGTAGTCCATTTTTTGTCAAAAGGCTGCGAACATTTAGGTGCATGAATTTAAAACCTTTTCGTGCTTTGAAATCACTGGGAGTGTGTCAAAATAAAAGCTGGATCATTACCTGCCAACCTATTATTCATAACCAAAGGCTGCAACGCAATGGAAATTAAATTGACCCCAATCCGCCCTGCATATTGTTAATCTATTACTGTTTGCTGGGGGCGTAATAATAGTAGGGATTACCTGAGACAGTAGCAGCTTCACTTTACAATACAAATTTGTAAAAGTGCTAATGGCAGTACCCTCCTTTCTAGACATAGCAAGGATAGTAAAAGAGCATAACAATCAATTTCTTAGAGCTGCCTTGTAGTGATTAGATAGTGTCCACGGGACAATGTGATTTGAGTGAATTCCATCATCCCTGAAAAGTATTTTCGGTTGCCAAAAGGTAtcaaaattgtcaataaaagtAATTCCTGAGGTTTGACAGTAGACTTTCAGCCAGTCATGGAGTGCTAGCAGTTTCCTGAATCTGCCACTTCTATGACCCAgtggaggaagagggacagagatgaACGGACACTTATTTAAGTCTTTCAGCTTGTTAACAAGGTCTATAAAATGTGTTTTAAGGTGCTCCGATCTGGCCAACTTATCTCTTAAGGATCtgacccttttttcaattttcgcctaaaatgacatacccaaatctaactgcctgtagctcaggacctgaagcaaggatatgcatattcttgataccatttgaaaggaaacactttgaagtttgtggaaatgtaaaatgaatgtaggagaatataacatattagatctggtaaaagataatacaaagaaaaaaacctGCTTTTTTtattaccatcatctttgaaatgcaagagaaaggccataatgtattattccagcccagccacaatttacattttggccactagacggcagcagtgtatgtgcaaagttttagactgatctgttcaaaatgttgtatcaagactgcccaaaagggcctattggtttattaatacattttcaagttcctaattgtgcactctcctcaaacaatagcatggtattatttcactgtaaaagctaatgtaaattggacagtgcagttagaattttaggaatttaagctttctgcccatatcagatatgtctatgtcctgggaaatgttcatgttacttacaacctcatgctaatcacattagcctacgttagcttatCCATTCAGTGGGGGGGACACCGATTCTGTAGAGGTTAATGTAATTTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU610259 True 2002 lncRNA 0.37 1 68990838 68992839

Neighbor

gene id symbol gene type direction distance location
LOC110526456 LOC106587398 coding upstream 2699 68978897 ~ 68988139 (+)
LOC110526457 LOC106587399 coding upstream 13828 68965055 ~ 68977010 (+)
LOC118965123 NA coding upstream 35453 68955265 ~ 68955385 (+)
LOC110526454 LOC106587403 coding upstream 43964 68938642 ~ 68946874 (+)
LOC110526452 LOC106587404 coding upstream 54077 68922838 ~ 68936761 (+)
LOC110526955 LOC106587395 coding downstream 14216 69007055 ~ 69018414 (+)
LOC110526458 LOC106587394 coding downstream 38043 69030882 ~ 69133616 (+)
LOC110526459 LOC106562249 coding downstream 155491 69148330 ~ 69189966 (+)
rhcg rhcg coding downstream 229326 69222165 ~ 69228485 (+)
LOC118964925 NA coding downstream 287346 69280185 ~ 69293194 (+)
G538907 NA non-coding upstream 28969 68961665 ~ 68961869 (+)
G538906 NA non-coding upstream 29384 68961215 ~ 68961454 (+)
G538869 NA non-coding upstream 74538 68916056 ~ 68916300 (+)
G538867 NA non-coding upstream 76802 68913773 ~ 68914036 (+)
G538864 NA non-coding upstream 79301 68911221 ~ 68911537 (+)
G538925 NA non-coding downstream 26010 69018849 ~ 69019053 (+)
G538931 NA non-coding downstream 49782 69042621 ~ 69044027 (+)
G538891 NA non-coding downstream 51231 69044070 ~ 69144935 (+)
G538977 NA non-coding downstream 222728 69215567 ~ 69216547 (+)
G538991 NA non-coding downstream 248454 69241293 ~ 69275222 (+)
G538859 NA other upstream 83991 68906045 ~ 68906847 (+)
G538607 NA other upstream 178948 68811119 ~ 68811890 (+)
G538561 NA other upstream 286142 68704398 ~ 68704696 (+)
LOC110526436 LOC107688027 other upstream 309186 68679317 ~ 68681675 (+)
G537617 atxn1l other upstream 1223225 67766756 ~ 67767613 (+)
G538877 LOC106582599 other downstream 3244 68996083 ~ 69002828 (+)
G539068 NA other downstream 368802 69361641 ~ 69367642 (+)
G539959 NA other downstream 1023503 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1043355 70036194 ~ 70039507 (+)

Expression


Co-expression Network