G538877 (LOC106582599)


Basic Information

Item Value
gene id G538877
gene name LOC106582599
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68996083 ~ 69002828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610258
tcctggcagagttgtgcagactcaggacaactgagctttggcggaatatgcagatttaaagaggagtctgtaatttgctttgtaatgatcatgattttctcctcaaagaagttaatgaatttaatactgctgaagtgaaagccatcctctcttggggaatgctgctttttagttagctttgcgacagtatcaaaaatacatttcggattgttcttattttcctcaattaagttggaaaaataggatgatcgagcagcagtgagggctcttcgatactgcttggtactgtctttccaagctaatcGATAGACTTCCAGTTTGAtgtggcgccatttccattccaattttctggaagcttgcttcagagcttgggtattttctgtataccagggagctagtttcttatgacaaatgttttttgtttttaggggtgcaactgcatctagggtgttgcgcaaggttaaattgagttcctcagttaggtggttaactgattttgtGCTCTGACGTTCTTGGGTAGGCAgatggagtctggaagggcatcaaggaatctttgggttgtctaagaatttatagcacgacttttgatgctccttggttggggtctgagcagattatttgttgcgattgcaaacgtaataaaatggtggtcagatatttccaggattatgaggaaaaacattaagatccacaacatttattccaagggacaaaactaggtccagagtatgactgtgacagtgagtaggtccagagacatgttggacaaaacccactgagtcgatgatggctccgaaagccttttggagtgggtctgtggacttttccatgtgaatattaaaatcaccaaaaatttgaatattatctgttATGACtgcaaggtccgataggaattcagggaactcagtgaggaacgctgtatatggcccaggaggcctgtaaacagtagctataaaaagtgattgagtaggctgcatagatttcatgactagaagctcaaaagacaaaaaagtttaaaaaaagttgtcaattgaaatttgctatcgtaaatgttagcaacacctccgcctttgcgggatgcacgggggatatggtcactaatgtaaccaggaggtgaggcctcatttaacacagtaaattcatcaggcttaagccatgtttcagtcaggccaatcacatcaagattatgatcagtgattagttcattgactataactgcctttgaagtgaggtaactaacattaagtagccctattttgagatgtgaggtatcacgatctctttcaataatgacaggaatggaggaggtctttatccgagtgagattgctaaggccaacaccgccatgtttagttttgcccaaccttgGCCGATCCACatacacggtctcaatggggatagctgagctgactacactgtgCTTGTGGCAGACttcactaagctggcaggctggctaacagcctggcctgcaccctatttcattgtggagatagaggagttagagccctgtctatgttggtagataagatgagagcacccctccagctaggatggagtccgtcactcctcagcaggccaggtttgGTCCTGTTTGTTTgccccagaaagagggccaattatctacaaattatatcttttgggaggggcagaaaacagttttcaaccagcgattgagctgtgagactctgctgtagagctcatcactccccctaactgggagggggccagagataattactcGATgcagacacatctttctagctgatttacacgctgaagctatgttgcgcttggtgacctctgactgtttcatcctaacatcgtgccgacgtggataacttcagattagccttaacgtcggtagccctacCCCCTGATAGACAGaatatgatcgctggatgattagttttaagtctaatactgcgggtaatggagtcgccaatgactagggttttcaatttgtcagagctaacggtgggaagcttcggcgtctcagacccagTAACGGGAgcagtagagacaagagaaggctcggcctcagactccgactcgctgcttaatggggaaaactggttgaaagtttctgtcggctgaatgagcgagcATTCCTGTAGcctttccctccagaagccatgagaaagttgtccggctgagGGGCCCGTgcaaggggatttatactaatgttactatctgtacttactggtggcacagatgctgtttcatcctttcctacacggaaattacccttgcctaacgcttgcgtctgaagctgggcttgcagcacagctatcctcgcgggaaggcgatcgttctcctgtaaattatgagtacagcgactgcaattagaaggcataatgttaatgttactacttagcttcgattgttggaggtcctgacgaaccatgtccagataaagcgccCGGAGTGAAATAtttgagtgagggaaaaactaaaaatataaacggtaattaaaaagaaaaaaacgtaaagttgtcaggtagcaaagtaaggttggcaataAAACGCACAGCCATtattagggaatgtaaaccaggtgtgctgggaacaagacaaaacaaatggaacaatgagAACATcaagcggcgatggctagaaagccggtgacgtcgaccgctgaacgccgcccaaacaaggagaggagccgacttcggcggaagtcgggacagtacacccccccccctgaTGCGCGGCTCCAGCGGAGCgaccgacaccggcctcggggacgacccagatggtgaggcgcagggcgatccggccGGCGACGGTGGAACTCCCtgcacccagcacctctcctccggaccgtacccctcccactccatgaggtactgaaggccccccgCCCAACGCCTCGAATCCAGGGTGGAACGAACGGAGCATGCCGGGTccccctcgatgtctagagggggcggaggaacctcccatACCTCAGATTCCTGGAGCGGACCAGCCgtcaccggcctgaggagagatacATGGAACGatgggttaatacggtaatcggggggaagctgtaacctgtaacacacctcgttcactctcctcaggactttgaatggccccataAACCGCGGGCcgagcttccggcagggcaggcggagggtcaggtttcgggtcgagacccggtcccccggtgcaaacaccGGGACCTCACTGCGGTGATGGTCTGCGCCCACTTTCTGGCGCAGCACGGCGCGCTGAAGGTGGACATGGGCGGCGTCCCATGTTTCCTCCGCGCTCCGGTACCAGTGgaccaccgcaggagcctcggtctgactctgatacCAAGGAGCCAGAACCCGCTGATACCCCAATACATACTGGAAGGGggtgaggttagtggaggagttgcggagcgagttctgggccatctctgcccagggcacgaatgctgcccactcccccggccaggcctggcaataggacctcagaaacctacccacatcctggtttactctctccacctgcccgttactctcggtgTGAAAACCTgaaggtaaggctgaccgagacccccagacgttccatgattGCCTTACTGAGACTCGACGTGAACTGGGGTCCCTGATCCCTGTAGTCccagaagacgtgtgtaaacaaggcctccgcagccagtagggccgtagggagaccgggcaaagggaggagatgacaggacttagaaaaatgatccacaacgaccaggatcgtagtgttaccctgtgagggaggaaaaACAGTCAGGAAATCTACcaacaggtgcgaccacggccgttgtggaacgggtaagggttgtagcttacctctgggcaggtgcctaggaaccttgcactgggcgcacaccgagcaggaggaaacataaaccctcacatccttagccaaagtgggccaccagtacttcccagtcagacagcgcaccgtccgaccgatccccggatgaccagaggagggtgatgtgTGGGCCCAGTAGATCAACTGGTCACGGACAGCAGATGGAATGTACAGACGCTCgacgggacactggaggggagcgggctctgtTCATTGTCCGCGTTCAGCTCCCACACGACCGGCActaccaggcaggaggccgggagtatgggagtcTGATCCAGGGgctgctcctctgtgtcatacatccgggacagtgcgtctgccttcatattctgggaacctggtctgtaggacagggtaaacacaaaacaggtaaagaacatggcccaccttgcctgatgaggattcagtctcctccgGATGTCCGGATGTcctccaggttgcggtggtcagtccagatgagaataGTGTGTTTCGCctcctcaagccaatgtctccacgctttcaacgctttaaccacagccaacagctcccggtcccccacatcatagttccgctctgccgggctgagcttcttcaagaagaaagcacaggggcggagcttcggtggcgtgccagagcgctgagagagcacggctcctatcccagcctcggacgcgtccacctccactatgaacgccaaagagggatccggatgggccagcacgggagccgaggtaaacagagctcttaggtgcccaaaagccctgtccgcctcaaccGACCACTGCAGATGTACaggaccccccttcagcagtgagctAATGGGACCAGCCACCTGGCCAAAACCACCGGATATGCAAACCCTAAAAACctctgcacctcctttaccgtggtgggagtcggccaattacgcacggctgaaatgcggtcactctccatctccacccctgatgtggaaatgcaataccctaggaaggagacggcctgctgaaagaacaggcatttctcagccttgacctACAGGTCATGCTCCGACAGTCGACCAAGTACCCTGCACACCAAgaacacatgctcggcgcgtgtagcggactatatcagaatgtcatcaatatacaccactacaccctgcccgtgcaagtcTGCTGACTCCATGGGTGGTGTAAATTTCTGTCAAGGTTGTGCGCTACTGAtacgaagtcaggtgcaggagagcagtgaGTTGTGATCAGGTGCACTTTTGTTTGGAAAAAGCACAAAAGACAGACGCAACCGTGTCAAAAATCCTCCAGCCACAGGTAAAAGTCAATAAGCGCGAAAACACTCACAAATATACACATGTATGACAAATACGTACAATGGGTCAAAATACGATACCCCGGGGGAAAAACAGTCTGGCTCATCACActaaacacgtaacaaaacaatttcacacaaagacatggggggggggaacagaggaataaaaacatgcagtgtgattagggaatgtaaatcaggtgtgcagggaacaagacaaaacaaatggaacaatggaGAACATGGAGcggtgatggctagaaagccggtgacgtcgaccgccgaacgctgcctgaacaaggagaggagccaacttcggcggaagtcgtgacacattgagactggtgttttgcgggtactatttaattttGAGGACCATTTGAGGACCTGtgaagcgtctgtttctcaaacttgacactaatgttcttgtcctctgcaccagggcctcctacccctctttctattctggttagagacagtttgcgctgttctttgaagggagtagtacacagcgttatatgagatcttcagtttcttggcaatatcTTTCATGGAATAGCCCttttttctcagaacaagaataggctgacgagtttcagaagaaagttctttgtttctagccattttgaggctgtaatcgaacccacaaatgctgatgctccagatactcaactagtctaaagaaggccaattttattgcttctttaataatcaggacgacagttttcagctgtgctaatgtTGGTCAATTTCTTCAACAGATGATCAGGTCTATATAATTATCAAACGTATATATATTGCTAGGAGAAAGGAAACACAGACTCTTTGTTTAAGTATTAAAATTATCCTTTAGTAATACAATTGTAGGCAGAAgttggtacagagtacagtatatgataGCTCTCCCCAGGTTCTGCAAAGTGTCTAAGATATCCTGTAACTTATATAGCCTCCCCAGTTCCCTTTGCGTGACTTTCCCTGGTAACAACATTTTAATGAATCTAACCTCCCCCTGACAGCAGCAACCATCTTGTCAGCAATTAAAAGCTCATAAGTGGGTTTGACCCGAAACTTGACCTTTCATCACAAGTATGTGGTCATAACAAGGTGAATGAATCTAAGCATCTTCTGATAGGTGGCTGTTTTCATCAGGCCTGTGGAAGCCTtgtgttctcagaaaaccagtcgtattctcagaacctcagacagCCACGGTGGGGCCCAGACAGGAGGAGTATGAGCGTAGGCGGTTTTCACCTTCTGATAGTGTCTGAAGGGCACAACACTCAAAACaggttttaacacacacacagaggtctccTGAGAGGAGTCCTTACAGTTTATCATAACAAAATGTATTAACCTTTTAAAAGGTATGAGGCCTTGGTTTAACCCCTTGTAGAGAGAATCTTTTGAgaatgttgcattgaaagtggctaatattcggttgattcgatcacaattgccacagtataGAGAAATGTTGATAGTGTAACAACGAAAACTCTAGAAATgtcagtgaagttcaatctcgggcttctctccctctgttggcTGATATTTCTTCTTTGCTGCAGTCCTGAGGGAGCTGCGTGGCAGTTTCGGGACTATTGCGTGCCCAtgtgcagcttagaggg

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610258 True 6746 TUCP 0.49 1 68996083 69002828

Neighbor

gene id symbol gene type direction distance location
LOC110526456 LOC106587398 coding upstream 7944 68978897 ~ 68988139 (+)
LOC110526457 LOC106587399 coding upstream 19073 68965055 ~ 68977010 (+)
LOC118965123 NA coding upstream 40698 68955265 ~ 68955385 (+)
LOC110526454 LOC106587403 coding upstream 49209 68938642 ~ 68946874 (+)
LOC110526452 LOC106587404 coding upstream 59322 68922838 ~ 68936761 (+)
LOC110526955 LOC106587395 coding downstream 4227 69007055 ~ 69018414 (+)
LOC110526458 LOC106587394 coding downstream 28054 69030882 ~ 69133616 (+)
LOC110526459 LOC106562249 coding downstream 145502 69148330 ~ 69189966 (+)
rhcg rhcg coding downstream 219337 69222165 ~ 69228485 (+)
LOC118964925 NA coding downstream 277357 69280185 ~ 69293194 (+)
G538878 NA non-coding upstream 3244 68990838 ~ 68992839 (+)
G538907 NA non-coding upstream 34214 68961665 ~ 68961869 (+)
G538906 NA non-coding upstream 34629 68961215 ~ 68961454 (+)
G538869 NA non-coding upstream 79783 68916056 ~ 68916300 (+)
G538867 NA non-coding upstream 82047 68913773 ~ 68914036 (+)
G538925 NA non-coding downstream 16021 69018849 ~ 69019053 (+)
G538931 NA non-coding downstream 39793 69042621 ~ 69044027 (+)
G538891 NA non-coding downstream 41242 69044070 ~ 69144935 (+)
G538977 NA non-coding downstream 212739 69215567 ~ 69216547 (+)
G538991 NA non-coding downstream 238465 69241293 ~ 69275222 (+)
G538859 NA other upstream 89236 68906045 ~ 68906847 (+)
G538607 NA other upstream 184193 68811119 ~ 68811890 (+)
G538561 NA other upstream 291387 68704398 ~ 68704696 (+)
LOC110526436 LOC107688027 other upstream 314431 68679317 ~ 68681675 (+)
G537617 atxn1l other upstream 1228470 67766756 ~ 67767613 (+)
G539068 NA other downstream 358813 69361641 ~ 69367642 (+)
G539959 NA other downstream 1013514 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1033366 70036194 ~ 70039507 (+)
G540179 NA other downstream 1479122 70481950 ~ 70484368 (+)

Expression


Co-expression Network