G538931


Basic Information

Item Value
gene id G538931
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69042621 ~ 69044027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610321
TGAGACGCCTCTACTCCCGTCGTGGCCGAGACGCCTCTGCTCCCGTCGTGGCCGAGACGCCTCTGCTCCCGTCGTGGCCGAGACGCCTCTGCTCCCGTCGTGGCCGAGGCTCATAAAGCCTGCGATGTTGATGAGGCTCGATGTCCTGGTGTTAAACCTGTCCCTCTGCTGGAATAGTCTGCTACTTCTGGGGCTCACCTCATCTCGTGTGGTTTACTGCCCCTGTCTGGCTTAATGGTCTCATCTCTCTGGTCCTCTTTCTACCTACTCCTGATTTTCCTATCCACAGTCAATTGCTGTCATTATAGAGTGATTCACCCTGGCTTTTATAACATGGGTGACCTTTTGGCACCGTCATTGGCTTTGGGGTAAGTCGAATACCAGAAGTTAAACACACTTGTATATGAAGttgagagctgtttgaaaagcaGTGTTTGCATGATGGATGTCTCTCTTTTCAGGTTTGTGCTGCTTTCCTTTTCGAGAAGTGACGCAAATGTCTTGCTACTGGTGTACAGATCTTTAACAAAATCTGCCTTTCCTGTCCCATTTTCTTTTGACAACTTACTTTGATTATTTATAGACAGATGTGGGAAGGAACCTGATTAATAAATAAATGCCTCATCgtttcctacacacacacatcaaagtaGAATCCAGCATTTCTCAGAACCCTGCCATTCCTTTTTTCTCAACGAGCGCTGTGGTTTCTGTCACTAATGGCTGATGTGAACGCTTCCTGTGTTCAGAGGGTAAGCTAGGATGAGGAAGTGCAAGGTGGGCTACCCTGATCAGAGAAGGTCAAATATCTTCATGATAATAAGAACAGTAGCCTCCAGTTCATTTCACTGGTTGAACCTCCAACTCTGTGCCTGTGTTGTGTTAAGAGTACTCTATCCCTTCTGTACTACGTGGAACCACAAGGCCTAGCATTAAACCCATACGTGATCTAATGGGGAAGGATGGTCTATCTCTGCCATCATGAGACTGCTGCTACAGACCTGCACCATGACTGGGCGTGATTAGTGTTTCTGGGGGGCATTTCCatctaaaaggacccatgagcatcaacatgtgaagttcataggctCATGTCAAATGAAGGCTTAGAGTCTATCCTTTTGAGAAATTAAGGCATACaattttcaaccattttccatcctacaaattaggaataagcaaaggcttACTAGTAACGGAAttactgcaattgaattggctacaatgggagaTGAtggtagtcacaaaccacagttgggtcacctgttactgtcctcccttccactggcgtactgttatgttcagctcaacGTTTTTAAAATTCTCTTTCTGTTGTCTGGTAATCAAAGCAAgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610321 True 1355 lncRNA 0.46 2 69042621 69044027

Neighbor

gene id symbol gene type direction distance location
LOC110526955 LOC106587395 coding upstream 24207 69007055 ~ 69018414 (+)
LOC110526456 LOC106587398 coding upstream 54482 68978897 ~ 68988139 (+)
LOC110526457 LOC106587399 coding upstream 65611 68965055 ~ 68977010 (+)
LOC118965123 NA coding upstream 87236 68955265 ~ 68955385 (+)
LOC110526454 LOC106587403 coding upstream 95747 68938642 ~ 68946874 (+)
LOC110526459 LOC106562249 coding downstream 104303 69148330 ~ 69189966 (+)
rhcg rhcg coding downstream 178138 69222165 ~ 69228485 (+)
LOC118964925 NA coding downstream 236158 69280185 ~ 69293194 (+)
trnar-acg-7 NA coding downstream 258305 69302332 ~ 69302404 (+)
LOC110526466 LOC106587388 coding downstream 343298 69387325 ~ 69422563 (+)
G538925 NA non-coding upstream 23568 69018849 ~ 69019053 (+)
G538878 NA non-coding upstream 49782 68990838 ~ 68992839 (+)
G538907 NA non-coding upstream 80752 68961665 ~ 68961869 (+)
G538906 NA non-coding upstream 81167 68961215 ~ 68961454 (+)
G538869 NA non-coding upstream 126321 68916056 ~ 68916300 (+)
G538891 NA non-coding downstream 43 69044070 ~ 69144935 (+)
G538977 NA non-coding downstream 171540 69215567 ~ 69216547 (+)
G538991 NA non-coding downstream 197266 69241293 ~ 69275222 (+)
G538993 LOC106587389 non-coding downstream 263952 69307979 ~ 69309980 (+)
G538877 LOC106582599 other upstream 39793 68996083 ~ 69002828 (+)
G538859 NA other upstream 135774 68906045 ~ 68906847 (+)
G538607 NA other upstream 230731 68811119 ~ 68811890 (+)
G538561 NA other upstream 337925 68704398 ~ 68704696 (+)
G539068 NA other downstream 317614 69361641 ~ 69367642 (+)
G539959 NA other downstream 972315 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 992167 70036194 ~ 70039507 (+)
G540179 NA other downstream 1437923 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 1507768 70551763 ~ 70558098 (+)

Expression


Co-expression Network