G539378


Basic Information

Item Value
gene id G539378
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69080484 ~ 69081192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610834
GAGCAGAGCTCAACCTAATGGCAGTTTGATGGGTTCTGAATAGCCAATTAATGATTTCATTAGAGAGAATGGAAGTGTATAAATCACTGTAGCTAACTAAAGTTAGAAGTGTCATGTCTACAGCATTAACAGAGTACTGTAGTTGGATCATAACAGGTCTACAGCATTAACAGAGTACTGTAGTTGGATCATAACATGTCTACAGCATTAACAGAGTACTGTAGTTGGATCATAACAGATCTACAACATTAACACAGTACTGTAGTTGGATCATAACATGTATACAACATTAACACAGTACTGTAGGTGGATCATAACATGTATACAACATTAACACAGTACTGTAGGTGGATCATAACATGTCTACAGCATTAACACAGTACTGTAGGTGGATCATAACATGTCTACAGCATTAACACAGTAATGTAGTTGGATCATAACATGTCTACAGCATTAACACAGTAGTCTAGGTGGATCATAACATGTCTACACCAAATGAGGTCACTGCTTTAGAAAACCAACGAATGACTTCAGACAATCTTGGCAGACTATGTAATAATAAATAGTACAATATGTCCATCCTGGCTGTGACGAAGCCTAGGGCTGGGACATGGCTAGGGCTGGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610834 True 627 lncRNA 0.38 2 69080484 69081192

Neighbor

gene id symbol gene type direction distance location
LOC110526956 NA coding downstream 59768 69018661 ~ 69020716 (-)
LOC110526455 LOC106587401 coding downstream 126785 68949510 ~ 68953699 (-)
LOC110526450 dnaaf1 coding downstream 250728 68827577 ~ 68829756 (-)
LOC110526447 LOC106587408 coding downstream 263707 68807413 ~ 68816777 (-)
LOC110526446 LOC106587411 coding downstream 287790 68786733 ~ 68792694 (-)
LOC118964924 LOC106562250 coding upstream 166432 69125027 ~ 69272291 (-)
LOC110526462 NA coding upstream 191796 69272988 ~ 69289496 (-)
trnar-acg-6 NA coding upstream 219950 69301142 ~ 69301214 (-)
LOC110526463 LOC106587389 coding upstream 224381 69305573 ~ 69317496 (-)
LOC110526464 NA coding upstream 240451 69321643 ~ 69329447 (-)
G539355 NA non-coding downstream 24762 69054433 ~ 69055722 (-)
G539335 NA non-coding downstream 72661 69007571 ~ 69007823 (-)
G539332 NA non-coding downstream 84829 68995394 ~ 68995655 (-)
G539331 NA non-coding downstream 85180 68994741 ~ 68995304 (-)
G539307 NA non-coding downstream 87050 68990899 ~ 68993434 (-)
G539383 LOC106587394 non-coding upstream 13033 69094225 ~ 69104526 (-)
G539382 LOC103462559 non-coding upstream 37175 69118367 ~ 69120636 (-)
G539398 NA non-coding upstream 52671 69133863 ~ 69166405 (-)
G539306 NA other downstream 74819 69002743 ~ 69005665 (-)
G538460 LOC106587433 other downstream 563803 68510315 ~ 68516681 (-)
G538277 NA other downstream 935577 68142251 ~ 68144907 (-)
G539674 LOC106587381 other upstream 534562 69615754 ~ 69616671 (-)
G539714 NA other upstream 607715 69688907 ~ 69690015 (-)
G540376 NA other upstream 1022606 70103798 ~ 70107175 (-)
LOC110526488 LOC106562298 other upstream 1569772 70623828 ~ 70666213 (-)

Expression


Co-expression Network