G539139


Basic Information

Item Value
gene id G539139
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69474348 ~ 69477339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610571
ggagataaggtcagggtctagataGAGATACGGGCAGGATCTAGATAGAGATacggtcagggtctagttggagataaggtcagggtctaaaTAGAAATACggtcagggtctagttagagataaggtcagggtctagttagagataaggtcagggtctagttagagataaggtcTAGTTAGAGACAATGTCAtggtctagttggagataaggcCAGGGTCCAAATAGAGATAAGGTCTAATAGGAGACAAtgtcagggtctagttggagataaggtcagggtctagttagagataaggtctagttagagacaatgtcagggtctagtt

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU610571 True 327 lncRNA 0.44 2 69474348 69477339

Neighbor

gene id symbol gene type direction distance location
LOC110526466 LOC106587388 coding upstream 51785 69387325 ~ 69422563 (+)
trnar-acg-7 NA coding upstream 171944 69302332 ~ 69302404 (+)
LOC118964925 NA coding upstream 181154 69280185 ~ 69293194 (+)
rhcg rhcg coding upstream 245863 69222165 ~ 69228485 (+)
LOC110526459 LOC106562249 coding upstream 284382 69148330 ~ 69189966 (+)
pdcd5 LOC106587385 coding downstream 53848 69531187 ~ 69539723 (+)
mvda erg19 coding downstream 64554 69541893 ~ 69550751 (+)
LOC110526470 LOC106587382 coding downstream 75160 69552499 ~ 69583243 (+)
mc1r mc1r_par1 coding downstream 112706 69590045 ~ 69591263 (+)
LOC110526471 tbb3 coding downstream 121814 69599153 ~ 69604659 (+)
G539138 NA non-coding upstream 3106 69469984 ~ 69471242 (+)
G539105 NA non-coding upstream 46561 69408748 ~ 69427787 (+)
G538993 LOC106587389 non-coding upstream 164368 69307979 ~ 69309980 (+)
G538991 NA non-coding upstream 199126 69241293 ~ 69275222 (+)
G539213 NA non-coding downstream 181159 69658498 ~ 69660305 (+)
G539239 NA non-coding downstream 209609 69686948 ~ 69687800 (+)
G539258 NA non-coding downstream 242597 69719936 ~ 69720174 (+)
G539265 NA non-coding downstream 268124 69745463 ~ 69745782 (+)
G539068 NA other upstream 106706 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 462386 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 471520 68996083 ~ 69002828 (+)
G538859 NA other upstream 567501 68906045 ~ 68906847 (+)
G538607 NA other upstream 662458 68811119 ~ 68811890 (+)
G539959 NA other downstream 539003 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 558855 70036194 ~ 70039507 (+)
G540179 NA other downstream 1004611 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 1074456 70551763 ~ 70558098 (+)
cmc2 cmc2 other downstream 1138186 70615476 ~ 70621510 (+)

Expression


Co-expression Network