G539590 (LOC106587385)


Basic Information

Item Value
gene id G539590
gene name LOC106587385
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69531215 ~ 69539722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611073
CTGCTTTATCAATGCTGGCATTGATTTATTGGAGTGAACACTGAACATGAAACCAAATCTCCCATTAACCTATCTCCAAATATTCAGTTACATCTTGCTTGTAAGAACATCAATGTACTGTCAGATATTGAGTATTACCTGTGGCAGGTGTACAATAGAAGCAACCATTCATATATCTGTGGTCTCACCATACACCTGTACAATAAGAGTGAAGCAGGAAGTTCTTCAAGTGCTGTCGTAGACTAACAACTGAGATAATTTAACAAATCCTGCTACAAATACATCTCAGCCTTTTAAAGCACATATCGCATACATTTCAGAAAAGAGCCTTTGAACCTAGTGAGTCAAACCAACTATGTCAAGCCTATACATTTCAATGTAATGCAACGTATAGCCTAATACACGACCTAGGAGGCCTTGTAAAGAATATCGACTACATtttaataaaaactatatttgAGACTTTTTTTCTTACAACATTGCTCTTATGTGATTATACTTGCATTTTTTTGAATGAAAGCAAATATAGTGCAACCCCATATGACCAATCAATGAGTCTTAAAGCACTCAGCTCAAAGACAAACTATCATCATGATAAAACTGTGTTGATTATTTGTGGAATAAGCATTCAAATGTaaggcttttttattttttaaatgtaaatgtaaaactgTTGAAGATACAGGTCAGCAAAAATGAATTAAAAAACAATGACTATACCCATGTGCTCTGTCCAGTTTGATGGTTTCACTATTGCTGAGTAGCAGCACACAGACAGTATTCACAAAGCAGTCTCGAAAAATGCAGCAGCAGGAATATACCCTAAGTTGCATTTTGTTCTGCTTCTTGTGGTGGAGAAAAAGTAAAACGTGGTGAAAATTTATATAAGCGAGAATATAGTAACGAGTTCCAGATGCACACAGGGGCTGATGTGGTATCCCAGGGTGCATCACTAACGCAGGGCCTTTGGCAAGTCAACGATGCCCGCCAACGAACAGAGCCCTGCTCCAACCTATGTCCTGAATCCCGCACTAAGTCAGTCGTCTAACTGGCTCCTGGGCTCCTTTCAACGCATCaatcatcctcctcatcatctGAGTCCATCACCTTTCGTCGGTTGACTTGACAGTTGTCTTTTTTTCTGTTTGCTGACTAACTTTTTCTAGGATGTCGATCAAACCAGTCTCTGAAATCTTTCCTCCCAGCTGGCCCATGCGGGCCATCTGTATAAGGTAATTCTCCACTGCTTTGGCCTTCTCTGGCTTCACCAGAGCCAAGTTACTCAATCTGGCGCGGGCGGACTGGTCTAGAACCTGAGCCAGCATGGAGTTCCTCATCTCTGTTTCCCTCTGTTTGGCCTCCTGCTGCCCTTGCTGGTCATTTGAAGAGTCCCCATGTTTTGACTGCAGTTCGGCCATGCGTTGCCGCCTGATAGCCTCCAATTCGTCGTCTGCCATTGTGTTCGAATTGATAGAAATTAGGCTTTATCAATGGTAAAATAAGAAAATCTCACTTCACGAGTCTTGTGGAACTGTTTCGTTAGGGGCCGGGCCCTGTTTCAGTATAATGTAATCGATCTCAGA
>TU611072
CTGCTTTATCAATGCTGGCATTGATTTATTGGAGTGAACACTGAACATGAAACCAAATCTCCCATTAACCTATCTCCAAATATTCAGTTACATCTTGCTTGTAAGAACATCAATGTACTGTCAGATATTGAGTATTACCTGTGGCAGGTGTACAATAGAAGCAACCATTCATATATCTGTGGTCTCACCATACACCTGTACAATAAGAGTGAAGCAGGAAGTTCTTCAAGTGCTGTCGTAGACTAACAACTGAGATAATTTAACAAATCCTGCTACAAATACATCTCAGCCTTTTAAAGCACATATCGCATACATTTCAGAAAAGAGCCTTTGAACCTAGTGAGTCAAACCAACTATGTCAAGCCTATACATTTCAATGTAATGCAACGTATAGCCTAATACACGACCTAGGAGGCCTTGTAAAGAATATCGACTACATtttaataaaaactatatttgAGACTTTTTTTCTTACAACATTGCTCTTATGTGATTATACTTGCATTTTTTTGAATGAAAGCAAATATAGTGCAACCCCATATGACCAATCAATGAGTCTTAAAGCACTCAGCTCAAAGACAAACTATCATCATGATAAAACTGTGTTGATTATTTGTGGAATAAGCATTCAAATGTaaggcttttttattttttaaatgtaaatgtaaaactgTTGAAGATACAGGTCAGCAAAAATGAATTAAAAAACAATGACTATACCCATGTGCTCTGTCCAGTTTGATGGTTTCACTATTGCTGAGTAGCAGCACACAGACAGTATTCACAAAGCAGTCTCGAAAAATGCAGCAGCAGGAATATACCCTAAGTTGCATTTTGTTCTGCTTCTTGTGGTGGAGAAAAAGTAAAACGTGGTGAAAATTTATATAAGCGAGAATATAGTAACGAGTTCCAGATGCACACAGGGGCTGATGTGGTATCCCAGGGTGCATCACTAACGCAGGGCCTTTGGCAAGTCAACGATGCCCGCCAACGAACAGAGCCCTGCTCCAACCTATGTCCTGAATCCCGCACTAAGTCAGTCGTCTAACTGGCTCCTGGGCTCCTTTCAACGCATCaatcatcctcctcatcatctGAGTCCATCACCTTTCGTCGGTTGACTTGACAGTTGTCTTTTTTTCTGTTTGCTGACTAACTTTTTCTAGGATGTCGATCAAACCAGTCTCTGAAATCTGAAAGAGACAATCCAAATGTAAGGAAGAGCCAATAGCAGATGGGTCAAGTCAGTGCTTTTCATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611073 False 1583 lncRNA 0.41 6 69531215 69539722
TU611072 True 1260 lncRNA 0.39 2 69538387 69539722

Neighbor

gene id symbol gene type direction distance location
LOC110526465 LOC106587363 coding downstream 66732 69367059 ~ 69464483 (-)
LOC110526464 NA coding downstream 201768 69321643 ~ 69329447 (-)
LOC110526463 LOC106587389 coding downstream 213719 69305573 ~ 69317496 (-)
trnar-acg-6 NA coding downstream 230001 69301142 ~ 69301214 (-)
LOC110526462 NA coding downstream 242053 69272988 ~ 69289496 (-)
LOC110526474 LOC106562278 coding upstream 118761 69658483 ~ 69695479 (-)
LOC110526478 foxf1 coding upstream 195852 69735574 ~ 69739533 (-)
irf8 NA coding upstream 418359 69958081 ~ 69966024 (-)
dusp22a ds22a coding upstream 436223 69975945 ~ 70014932 (-)
LOC110526482 LOC106587370 coding upstream 475548 70015270 ~ 70024522 (-)
G539555 NA non-coding downstream 119886 69408737 ~ 69411329 (-)
G539523 NA non-coding downstream 181328 69343207 ~ 69349887 (-)
LOC118964924 LOC106562250 non-coding downstream 258955 69125027 ~ 69272291 (-)
G539398 NA non-coding downstream 364810 69133863 ~ 69166405 (-)
G539633 NA non-coding upstream 3961 69543683 ~ 69547459 (-)
G539635 NA non-coding upstream 9847 69549569 ~ 69550729 (-)
G539638 LOC106587382 non-coding upstream 27403 69567125 ~ 69567815 (-)
G539674 LOC106587381 non-coding upstream 76032 69615754 ~ 69616671 (-)
G539677 NA non-coding upstream 79799 69619521 ~ 69621101 (-)
G539306 NA other downstream 525550 69002743 ~ 69005665 (-)
LOC110526455 LOC106587401 other downstream 577551 68949510 ~ 68953699 (-)
LOC110526447 LOC106587408 other downstream 719985 68807413 ~ 68816777 (-)
G538460 LOC106587433 other downstream 1014534 68510315 ~ 68516681 (-)
G539714 NA other upstream 149185 69688907 ~ 69690015 (-)
G540376 NA other upstream 564076 70103798 ~ 70107175 (-)
LOC110526488 LOC106562298 other upstream 1111242 70623828 ~ 70666213 (-)
G541798 NA other upstream 2069809 71609531 ~ 71613840 (-)

Expression


Co-expression Network