G539239


Basic Information

Item Value
gene id G539239
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69686948 ~ 69687800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610682
cctgtatatagcccccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtactccctgtatatagcctccacattgactctttaccggtactccctgtatatagcttccacattgactctgtaccggtaccccctgtatatagcctgcacattgactctttactggtaccccctgtatatagcctccacattggctctgtaccggtactccctgtatatagcctccacatggactctttaccggtaccccctgtatatagcctccacattgactctgtaccggtactccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatacagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtacccctgtatatagcctccacattgactctgtacccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610682 True 501 lncRNA 0.50 3 69686948 69687800

Neighbor

gene id symbol gene type direction distance location
LOC110526472 LOC106587380 coding upstream 32559 69642275 ~ 69654389 (+)
LOC110526473 LOC106587381 coding upstream 44829 69610562 ~ 69642119 (+)
LOC110526471 tbb3 coding upstream 82289 69599153 ~ 69604659 (+)
mc1r mc1r_par1 coding upstream 95685 69590045 ~ 69591263 (+)
LOC110526470 LOC106587382 coding upstream 103705 69552499 ~ 69583243 (+)
trnav-cac-7 NA coding downstream 12265 69700065 ~ 69700137 (+)
gas8 gas8 coding downstream 12487 69700287 ~ 69708734 (+)
LOC110526477 mthfsd coding downstream 36698 69724498 ~ 69732656 (+)
LOC118964926 NA coding downstream 51819 69739619 ~ 69756833 (+)
emc8 LOC106587369 coding downstream 338362 70026162 ~ 70028929 (+)
G539213 NA non-coding upstream 26643 69658498 ~ 69660305 (+)
mvda erg19 non-coding upstream 136228 69541893 ~ 69550751 (+)
G539139 NA non-coding upstream 209609 69474348 ~ 69477339 (+)
G539138 NA non-coding upstream 215706 69469984 ~ 69471242 (+)
G539105 NA non-coding upstream 259161 69408748 ~ 69427787 (+)
G539258 NA non-coding downstream 32136 69719936 ~ 69720174 (+)
G539265 NA non-coding downstream 57663 69745463 ~ 69745782 (+)
G539272 NA non-coding downstream 70086 69757886 ~ 69758091 (+)
G539278 NA non-coding downstream 74745 69762545 ~ 69762761 (+)
G539783 NA non-coding downstream 92384 69780184 ~ 69780410 (+)
G539068 NA other upstream 319306 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 674986 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 684120 68996083 ~ 69002828 (+)
G538859 NA other upstream 780101 68906045 ~ 68906847 (+)
G538607 NA other upstream 875058 68811119 ~ 68811890 (+)
G539959 NA other downstream 328542 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 348394 70036194 ~ 70039507 (+)
G540179 NA other downstream 794150 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 863995 70551763 ~ 70558098 (+)
cmc2 cmc2 other downstream 927725 70615476 ~ 70621510 (+)

Expression


Co-expression Network