G539272


Basic Information

Item Value
gene id G539272
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69757886 ~ 69758091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU610718
CGGCTACACATGACTTTTAACGAGCCAATGAGAGAGGAGGGTGTTGAGGATGAACATCTGGGATAAGAGGTAAAGAATATTCTTGCTAATTCCGAACCACTATAATGAGTGATATCTTGAAGTAGCACAGGTGGGGAAGAGTGCAGGTGGGCAGGCAGACTAGGAGTTGGTTTCATAAAAAGAGATTTGGTGATACGGAATTATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU610718 True 206 lncRNA 0.43 1 69757886 69758091

Neighbor

gene id symbol gene type direction distance location
LOC118964926 NA coding upstream 1053 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 25230 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 49152 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 57749 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 103497 69642275 ~ 69654389 (+)
emc8 LOC106587369 coding downstream 268071 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 278897 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 291059 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 793672 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 836656 70594747 ~ 70599188 (+)
G539265 NA non-coding upstream 12104 69745463 ~ 69745782 (+)
G539258 NA non-coding upstream 37712 69719936 ~ 69720174 (+)
G539239 NA non-coding upstream 70086 69686948 ~ 69687800 (+)
G539213 NA non-coding upstream 97581 69658498 ~ 69660305 (+)
mvda erg19 non-coding upstream 207166 69541893 ~ 69550751 (+)
G539278 NA non-coding downstream 4454 69762545 ~ 69762761 (+)
G539783 NA non-coding downstream 22093 69780184 ~ 69780410 (+)
G539787 NA non-coding downstream 27205 69785296 ~ 69785615 (+)
G539806 NA non-coding downstream 45087 69803178 ~ 69803444 (+)
G539843 NA non-coding downstream 83837 69841928 ~ 69842158 (+)
G539068 NA other upstream 390244 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 745924 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 755058 68996083 ~ 69002828 (+)
G538859 NA other upstream 851039 68906045 ~ 68906847 (+)
G538607 NA other upstream 945996 68811119 ~ 68811890 (+)
G539959 NA other downstream 258251 70015270 ~ 70019477 (+)
G540179 NA other downstream 723859 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 857434 70615476 ~ 70621510 (+)

Expression


Co-expression Network