G539783


Basic Information

Item Value
gene id G539783
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69780184 ~ 69780410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611306
CTCTTAGACTGCTCCACTTTACTGGATGTTCTTtactgaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcattgactCACACAGTAGCTGTTTTAGTATGTGCAAATTATTCCAGTGTTTAAAAGGCCCTGGGAATGTGATTTTCCTTGGTATCCCCAAGTTCACATGTATTTGGGATACTCCACAATGTGGCTTGTGCCACGGTTCTATACTGGTTAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611306 True 227 lncRNA 0.43 1 69780184 69780410

Neighbor

gene id symbol gene type direction distance location
LOC118964926 NA coding upstream 23351 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 47528 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 71450 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 80047 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 125795 69642275 ~ 69654389 (+)
emc8 LOC106587369 coding downstream 245752 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 256578 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 268740 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 771353 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 814337 70594747 ~ 70599188 (+)
G539278 NA non-coding upstream 17423 69762545 ~ 69762761 (+)
G539272 NA non-coding upstream 22093 69757886 ~ 69758091 (+)
G539265 NA non-coding upstream 34402 69745463 ~ 69745782 (+)
G539258 NA non-coding upstream 60010 69719936 ~ 69720174 (+)
G539239 NA non-coding upstream 92384 69686948 ~ 69687800 (+)
G539787 NA non-coding downstream 4886 69785296 ~ 69785615 (+)
G539806 NA non-coding downstream 22768 69803178 ~ 69803444 (+)
G539843 NA non-coding downstream 61518 69841928 ~ 69842158 (+)
G539854 NA non-coding downstream 74141 69854551 ~ 69854782 (+)
G539862 NA non-coding downstream 83593 69864003 ~ 69864220 (+)
G539068 NA other upstream 412542 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 768222 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 777356 68996083 ~ 69002828 (+)
G538859 NA other upstream 873337 68906045 ~ 68906847 (+)
G538607 NA other upstream 968294 68811119 ~ 68811890 (+)
G539959 NA other downstream 235932 70015270 ~ 70019477 (+)
G540179 NA other downstream 701540 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 835115 70615476 ~ 70621510 (+)

Expression


Co-expression Network