G539843


Basic Information

Item Value
gene id G539843
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69841928 ~ 69842158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611366
AGTCCAGAGAATCTGCATTCTTCCACTGAACTGTCTGACTCAGTGATAAGTGTTCCTAATTGTGTAATCACTGGCATTGGTATGAGTAGTTGTGTAATAACAGTCGTTTAACACAATATCTCATCTCACTCCCACTCAGTGTATCAGTACGTATTCACACCTGTTTTCTTGATGTCCTGATGGAATAACTCACTTTTTTCCAATAGGTTTGTGATTAACATTGTACATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611366 True 231 lncRNA 0.38 1 69841928 69842158

Neighbor

gene id symbol gene type direction distance location
LOC118964926 NA coding upstream 85095 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 109272 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 133194 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 141791 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 187539 69642275 ~ 69654389 (+)
emc8 LOC106587369 coding downstream 184004 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 194830 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 206992 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 709605 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 752589 70594747 ~ 70599188 (+)
G539806 NA non-coding upstream 38484 69803178 ~ 69803444 (+)
G539787 NA non-coding upstream 56313 69785296 ~ 69785615 (+)
G539783 NA non-coding upstream 61518 69780184 ~ 69780410 (+)
G539278 NA non-coding upstream 79167 69762545 ~ 69762761 (+)
G539272 NA non-coding upstream 83837 69757886 ~ 69758091 (+)
G539854 NA non-coding downstream 12393 69854551 ~ 69854782 (+)
G539862 NA non-coding downstream 21845 69864003 ~ 69864220 (+)
G539867 NA non-coding downstream 25886 69868044 ~ 69868345 (+)
G539871 NA non-coding downstream 37336 69879494 ~ 69879880 (+)
G539873 NA non-coding downstream 39992 69882150 ~ 69882389 (+)
G539068 NA other upstream 474286 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 829966 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 839100 68996083 ~ 69002828 (+)
G538859 NA other upstream 935081 68906045 ~ 68906847 (+)
G538607 NA other upstream 1030038 68811119 ~ 68811890 (+)
G539959 NA other downstream 174184 70015270 ~ 70019477 (+)
G540179 NA other downstream 639792 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 773367 70615476 ~ 70621510 (+)

Expression


Co-expression Network