G539871


Basic Information

Item Value
gene id G539871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69879494 ~ 69879880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611394
acaactgtaatgatacagttgtaatgtactttgatacaattgtaatgatacagttgttatgttctttgatacagttgtaatgatacagctgtaatgatacagttgtaaggttctttgatacagttgtaatgatacagctgtaatgatacagttgtaatgatacagttgtaatgcactttgatacagttgtaatgatacagttgtaatgttctttgatacagttgtaatgatacggctgtaatgatacagttgtaatgatacagttataatgtactttgatacagttgtaatgatacagttgtaatgtactttgatacagttgtaatgatacagttgtaatgttacagttgtaatgatacagttgtaatgatacagttgtaatgatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611394 True 387 lncRNA 0.30 1 69879494 69879880

Neighbor

gene id symbol gene type direction distance location
LOC118964926 NA coding upstream 122661 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 146838 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 170760 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 179357 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 225105 69642275 ~ 69654389 (+)
emc8 LOC106587369 coding downstream 146282 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 157108 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 169270 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 671883 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 714867 70594747 ~ 70599188 (+)
G539867 NA non-coding upstream 11149 69868044 ~ 69868345 (+)
G539862 NA non-coding upstream 15274 69864003 ~ 69864220 (+)
G539854 NA non-coding upstream 24712 69854551 ~ 69854782 (+)
G539843 NA non-coding upstream 37336 69841928 ~ 69842158 (+)
G539806 NA non-coding upstream 76050 69803178 ~ 69803444 (+)
G539873 NA non-coding downstream 2270 69882150 ~ 69882389 (+)
G539875 NA non-coding downstream 7294 69887174 ~ 69887480 (+)
G539903 NA non-coding downstream 59359 69939239 ~ 69939546 (+)
G539904 NA non-coding downstream 61633 69941513 ~ 69941729 (+)
G539925 NA non-coding downstream 95214 69975094 ~ 69975298 (+)
G539068 NA other upstream 511852 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 867532 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 876666 68996083 ~ 69002828 (+)
G538859 NA other upstream 972647 68906045 ~ 68906847 (+)
G538607 NA other upstream 1067604 68811119 ~ 68811890 (+)
G539959 NA other downstream 136462 70015270 ~ 70019477 (+)
G540179 NA other downstream 602070 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 735645 70615476 ~ 70621510 (+)

Expression


Co-expression Network