G539875


Basic Information

Item Value
gene id G539875
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69887174 ~ 69887480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611398
ccaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccgaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacgatgctgtctgtgtgagtggaccaattcagtttgtctgtgatgtgtatgccggggaacttaaaacttgctaccctctccactactgttccatcgatgtggataggggggtgttccctctgctgtttcctgaagtccacaatcatctccttagttttgttgacgttgagtgtgaggttattttcctgacaccacactcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611398 True 307 lncRNA 0.49 1 69887174 69887480

Neighbor

gene id symbol gene type direction distance location
LOC118964926 NA coding upstream 130341 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 154518 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 178440 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 187037 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 232785 69642275 ~ 69654389 (+)
emc8 LOC106587369 coding downstream 138682 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 149508 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 161670 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 664283 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 707267 70594747 ~ 70599188 (+)
G539873 NA non-coding upstream 4785 69882150 ~ 69882389 (+)
G539871 NA non-coding upstream 7294 69879494 ~ 69879880 (+)
G539867 NA non-coding upstream 18829 69868044 ~ 69868345 (+)
G539862 NA non-coding upstream 22954 69864003 ~ 69864220 (+)
G539854 NA non-coding upstream 32392 69854551 ~ 69854782 (+)
G539903 NA non-coding downstream 51759 69939239 ~ 69939546 (+)
G539904 NA non-coding downstream 54033 69941513 ~ 69941729 (+)
G539925 NA non-coding downstream 87614 69975094 ~ 69975298 (+)
G539927 NA non-coding downstream 94202 69981682 ~ 69983517 (+)
G539949 NA non-coding downstream 114716 70002196 ~ 70002823 (+)
G539068 NA other upstream 519532 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 875212 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 884346 68996083 ~ 69002828 (+)
G538859 NA other upstream 980327 68906045 ~ 68906847 (+)
G538607 NA other upstream 1075284 68811119 ~ 68811890 (+)
G539959 NA other downstream 128862 70015270 ~ 70019477 (+)
G540179 NA other downstream 594470 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 728045 70615476 ~ 70621510 (+)

Expression


Co-expression Network