G539927


Basic Information

Item Value
gene id G539927
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69981682 ~ 69983517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611457
agagcagagtgttcgggcgtcagagcagagtgttcgggcgtcagagcagagtgttctggagtcagagcagagtgttcgggcatcagagcagagtgttcgggcatcagagcagagtgttctggagtcagagcagagtgttCtggcgtcagagcagagtgttctggagtcagagcagagtgttctcgcgtcagagcagagtgttttCGCGTCAGAGCggtgttctggagtcagagcagagtgttctggagtcagagcagcgtgttctggagtcagagcagagtgttctcgcGTCAGAGCggtgttctggagtcagagcagagtgttctggagtcagagcagagtgttctggagtcagagcagagtgttct

Function

NR:

description
PREDICTED: uncharacterized protein LOC106933171

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611457 True 368 lncRNA 0.55 2 69981682 69983517

Neighbor

gene id symbol gene type direction distance location
LOC118964926 NA coding upstream 224849 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 249026 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 272948 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 281545 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 327293 69642275 ~ 69654389 (+)
emc8 LOC106587369 coding downstream 42645 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 53471 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 65633 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 568246 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 611230 70594747 ~ 70599188 (+)
G539925 NA non-coding upstream 6384 69975094 ~ 69975298 (+)
G539904 NA non-coding upstream 39953 69941513 ~ 69941729 (+)
G539903 NA non-coding upstream 42136 69939239 ~ 69939546 (+)
G539875 NA non-coding upstream 94202 69887174 ~ 69887480 (+)
G539873 NA non-coding upstream 99293 69882150 ~ 69882389 (+)
G539949 NA non-coding downstream 18679 70002196 ~ 70002823 (+)
G539959 NA non-coding downstream 31753 70015270 ~ 70019477 (+)
G539980 NA non-coding downstream 63296 70046813 ~ 70047132 (+)
G539985 NA non-coding downstream 70700 70054217 ~ 70054496 (+)
G539068 NA other upstream 614040 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 969720 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 978854 68996083 ~ 69002828 (+)
G538859 NA other upstream 1074835 68906045 ~ 68906847 (+)
G538607 NA other upstream 1169792 68811119 ~ 68811890 (+)
G540179 NA other downstream 498433 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 632008 70615476 ~ 70621510 (+)

Expression


Co-expression Network