G539959


Basic Information

Item Value
gene id G539959
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70015270 ~ 70019477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611490
TATTGGGTAAACATAGGAACTTTTATTTTGCTCTATAATACATGATGACCTTAAGAGGAAGAGACCTTCCAAAACGTATTGACTGAGGTAATGTGGACAATAGATAAATACAGACAAGTAATTGGTACGTTTGTAGGTGTCATGGTATGTAATGTGGTCCTCTGGATGGTTGGTTTACTTCTTCCATTCCTTGTTCTCATAGTCCCATTTGGCTGAGAAGCCCTCCACCGGGTTGATCCTCATGTCCAGCATCCTCTGTACCTCCTTCTCTTTCCATTCTGACTCAAAGGTGGGGGGGACAGGTCCGTACACAACTTCCTCTGCCATAGGACAACCAGTCCAGTCATGCCAATAAAGAAGAACATTCCTGCGATAACCGATTTCCACTCCTTTGTGCCCTCGTTCATCTCTGCGAAGCTCTGCTTGAAGCTAATACGGTACACTGTTGGTAAAGAGAAAATGCAAGACCTTGGTTAAA
>TU611492
TATTGGGTAAACATAGGAACTTTTATTTTGCTCTATAATACATGATGACCTTAAGAGGAAGAGACCTTCCAAAACGTATTGACTGAGGTAATGTGGACAATAGATAAATACAGACAAGTAATTGGTACGTTTGTAGGTGTCATGGTATGTAATGTGGTCCTCTGGATGGTTGGTTTACTTCTTCCATTCCTTGTTCTCATAGTCCCATTTGGCTGAGAAGCCCTCCACCGGGTTGATCCTCATGTCCAGCATCCTCTGTACCTCCTTCTCTTTCCATTCTGACTCAAAGGTGGGGGGGACAGGTCCGTACAAAACTTCCTCTGCCATAGGACAACCAGTCCAGTCATGCCAATAAAGAAGAACATTCCTGCGATAACCGATTTCCACTCCTTTGTGCCCTCGTTCATCTCTGCGAAGCTCTGCTTGAAGCTAATACGGTACACTGTTGGTAAAGAGAAAATGCAAGACCTTGGTTAAA
>TU611493
tgtgctgggggacaataaaaggccactaaaatgtgcagttgtgtcacacaacataatgccacagatgtctcaagttgagggagcctgcaattggcatgctgactgcaggaaggtccaccagagctgttgctagagaatggaatgttaatttctccaccataagctgcctccaacgttgttttcgagaatttgtcagtacgtccaaccggcctcacaaccacagaccatgtgttaccacgccagcccaggaccttcacgtgcagcttcttcacctgcaggatcgtctgagggTGGGTGGGGGATGCTGAGGAGTAATTCTGTCTGGAATAAAGCTCTTTTCTGggtgaaaaactcattctgattggctgggcctgggtcTCCAGtgagtgggcctatgccctccaaggcccacccatggctgcacacctacccagtcatgtgaaatccatagattagggcctaagttatttatttcaattgactaatttccttatttgaactgtaactcagtaaaatctttgaaattgttgcattgaTATTTTTTCAGGATATTACAACTGAATGATCACAGACTCCctccacaataaatgttcccATTCCTTTTCTTATTAGAAGACATACCAAACTTCCTCTGCCATAGGACAACCAGTCCAGTCATGCCAATAAAGAAGAACATTCCTGCGATAACCGATTTCCACTCCTTTGTGCCCTCGTTCATCTCTGCGAAGCTCTGCTTGAAGCTAATACGGTACATGCAATCTTCTCCTCATTGGAGAGTGTGGCCCAGGagcccttctccttctcctttaaGGACTTCTGCACTGCACTCAGCTCTGTCACAAACTGGACGTCTGGGAGGGGGTTCTCCCGCCTGTCAAAGTAGGCTGGGAGAGCGTAGTCGTCTACCTTGGCAACACCTGCAGGAAACTCACCCTGTTACTACATaggactgacacacacaaacaatacatGTATTCAAACCTGCATGGGACCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611490 False 478 lncRNA 0.44 2 70015270 70017130
TU611492 False 478 lncRNA 0.44 2 70015270 70017130
TU611493 True 995 TUCP 0.47 2 70016342 70019477

Neighbor

gene id symbol gene type direction distance location
LOC118964926 NA coding upstream 258437 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 282614 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 306536 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 315133 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 360881 69642275 ~ 69654389 (+)
emc8 LOC106587369 coding downstream 9032 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 19858 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 32020 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 534633 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 577617 70594747 ~ 70599188 (+)
G539949 NA non-coding upstream 12447 70002196 ~ 70002823 (+)
G539927 NA non-coding upstream 31753 69981682 ~ 69983517 (+)
G539925 NA non-coding upstream 39972 69975094 ~ 69975298 (+)
G539904 NA non-coding upstream 73541 69941513 ~ 69941729 (+)
G539903 NA non-coding upstream 75724 69939239 ~ 69939546 (+)
G539980 NA non-coding downstream 29683 70046813 ~ 70047132 (+)
G539985 NA non-coding downstream 37087 70054217 ~ 70054496 (+)
G539986 NA non-coding downstream 42837 70059967 ~ 70061147 (+)
G540008 NA non-coding downstream 72830 70089960 ~ 70090983 (+)
G539068 NA other upstream 647628 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1003308 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1012442 68996083 ~ 69002828 (+)
G538859 NA other upstream 1108423 68906045 ~ 68906847 (+)
G538607 NA other upstream 1203380 68811119 ~ 68811890 (+)
G540179 NA other downstream 464820 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 598395 70615476 ~ 70621510 (+)
G541903 NA other downstream 1782910 71800040 ~ 71804462 (+)

Expression


Co-expression Network