G539980


Basic Information

Item Value
gene id G539980
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70046813 ~ 70047132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611514
gtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaacccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611514 True 320 lncRNA 0.43 1 70046813 70047132

Neighbor

gene id symbol gene type direction distance location
LOC110525047 psf2 coding upstream 8356 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 17884 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 289980 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 314157 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 338079 69700287 ~ 69708734 (+)
LOC110526484 LOC106587367 coding downstream 2018 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 504631 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 547615 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 568344 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1634469 71681601 ~ 71690360 (+)
G539959 NA non-coding upstream 29683 70015270 ~ 70019477 (+)
G539949 NA non-coding upstream 43990 70002196 ~ 70002823 (+)
G539927 NA non-coding upstream 63296 69981682 ~ 69983517 (+)
G539925 NA non-coding upstream 71515 69975094 ~ 69975298 (+)
G539904 NA non-coding upstream 105084 69941513 ~ 69941729 (+)
G539985 NA non-coding downstream 7085 70054217 ~ 70054496 (+)
G539986 NA non-coding downstream 12835 70059967 ~ 70061147 (+)
G540008 NA non-coding downstream 42828 70089960 ~ 70090983 (+)
G540011 NA non-coding downstream 49283 70096415 ~ 70097945 (+)
G539068 NA other upstream 679171 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1034851 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1043985 68996083 ~ 69002828 (+)
G540179 NA other downstream 434818 70481950 ~ 70484368 (+)
G541903 NA other downstream 1752908 71800040 ~ 71804462 (+)
G542053 NA other downstream 2054248 72101380 ~ 72102474 (+)

Expression


Co-expression Network