G539986


Basic Information

Item Value
gene id G539986
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70059967 ~ 70061147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611520
ctgAAATTACAGCAATATATTCATAAATACCTAATTACTACATTCAACaaataatatattacattacaaTTAATTCAAACAAGTACATTTTAAAATCAGAGTTTCACAGCATCTAGAGTCTAGACATCCTCCATAGAGTCAGGGGGCTATTGCGTGTGCATGGTAGAGTAAGGAGGCTCTGGGGAAAGGCCTAGGGTCCTCCCGCTAACTCATTGGCTGCTTAACTCAGTGGTAGCGCTTGCTGTCTGATTGACAGGTGGTGCTCCTATTGTAGCTCTGCTCTGGTCTGTAAACATGCTTCCGCCTCCCTAACTGGGTGTTCCTCTGAAAGCTCACCAGGAGTGGAACAAAGAGGGATGTAGGGACCAGACCTGCAGCCACCCTCCCCTCCCGGTCATCTCACATCCACAGCATCAGACTGGAGTTCAAACAGAACCCCTTTAGGACTACATACTCAAAGCCTTGTCAAGTCTGACTGAGCACTACAATACCCACGCTGCATTGCGATCTATGCTGCCGGAGGTCCTCTTGTAAGGCTAAACGTTTTATTTTACAAAACTACCGGCCAGACACTCCCACAGAAGGAAGGTAGGGGAATAGAGAGACTGGGGAACAGGGGTACTGAGGCACAGGAGACAGCTATGGCCAGCAGCAAGGTGGACTGATGTAGGCATGAAAACACACACTATAGATGCACAGTGCAGAGCAGGACAATGATTCATATACTTGGCAAAAGAGAACCTTTCATTGACTTTGGATTTGAGGGCCCTCAAGTGGAGAAAAAAATCGTCCATTATCCAATTGTTGGCAAGGGCTTTGAAATTTATAATAAGTGGGATCAATGTAGTAATATAACAAGTTTTGAAGTGGGTTGGCCATTTAAATTCAGGGAGTTAGCTTAATTACTCTAttttgaggtttaaaaaagcCTCATGATATTTTGTGAGAGGGAGGGCTACTTTTTGGCACTGTTTCCTTTTATGGCAAACACAAAGGAGAAGAATCTCACAAGATCTCCCTCGGTGCATTGTCACATGGTACTGTCTGCATTGTTTCCTCTCTCTGGGTTTAGTGATGATATGAATGTCTCATTATAATGGGTGTTGTGTCCCTTGTTCTTAATGATAAGGCCCAGAGAGATGGGTCTAGTTATCAGACAACAGTTCTACTAAGGGCTCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611520 True 1181 lncRNA 0.44 1 70059967 70061147

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 1904 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 21510 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 31038 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 303134 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 327311 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 490616 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 533600 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 554329 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1620454 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1900777 71961924 ~ 71967802 (+)
G539985 NA non-coding upstream 5471 70054217 ~ 70054496 (+)
G539980 NA non-coding upstream 12835 70046813 ~ 70047132 (+)
G539959 NA non-coding upstream 42837 70015270 ~ 70019477 (+)
G539949 NA non-coding upstream 57144 70002196 ~ 70002823 (+)
G540008 NA non-coding downstream 28813 70089960 ~ 70090983 (+)
G540011 NA non-coding downstream 35268 70096415 ~ 70097945 (+)
G540015 NA non-coding downstream 41456 70102603 ~ 70102910 (+)
G540017 NA non-coding downstream 43508 70104655 ~ 70106006 (+)
G540021 NA non-coding downstream 48020 70109167 ~ 70111224 (+)
G539068 NA other upstream 692325 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1048005 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1057139 68996083 ~ 69002828 (+)
G540179 NA other downstream 420803 70481950 ~ 70484368 (+)
G541903 NA other downstream 1738893 71800040 ~ 71804462 (+)
G542053 NA other downstream 2040233 72101380 ~ 72102474 (+)

Expression


Co-expression Network