G540020


Basic Information

Item Value
gene id G540020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70113703 ~ 70118208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611562
agtgtgtgtggtgtacgaggtagtgtgtgtggcgtacaAGGTAGTGTGTGGCGtatgttgtagtgtgtgtggtgtatgcagtagtgtgtggtgtatgtagtagtgtgtgtggtgtatgtagtagcgtgtgtggtgtatgcagtagtgtgtggtgtatgcagtagtgtgtggtgtatgtagtagcgtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgcagtagtgtgtgtggtgtatgtagtagtgtgtgtggtgtatgtagtagtgtgtgtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtaggttgtggcgtatgtagtaggtTGTGGCgtatgtggtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgtagTCGTGTGTGGCGTatttagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgtagtagcgtgtgtggtgtatgcagtagtgtgtgtgtgtggtgtatgtattagtgtgtgtggcatatgcagtagtttgtgtggcgtatgtagtagtgtgtgtggcgtatgcagtagtgtatgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgtagtagtgtgtgtggtgtatgtagtagcgtgtgtggtgtatgcagtagtgtgtggtgtatgtagtagtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgcagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtgtgtgtggcgtacgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgtagtagtgtgtgtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtaggtTGTGGCgtatgtggtagtgtgtgtggtgtatgtagtcgTGTGTGTGGCGTatttagtagtgtgtgtggtgtatgtaatagtgtgtgtggcgtatgtagtcgtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagggtatgtggtgtatgtagtagtgtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgcagtagtgtgtgtggcgtatgtagtcgTGTGTATGTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611562 True 1429 lncRNA 0.47 4 70113703 70118208

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 55640 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 75246 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 84774 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 356870 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 381047 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 433555 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 476539 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 497268 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1563393 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1843716 71961924 ~ 71967802 (+)
G540021 NA non-coding upstream 2479 70109167 ~ 70111224 (+)
G540017 NA non-coding upstream 7697 70104655 ~ 70106006 (+)
G540015 NA non-coding upstream 10793 70102603 ~ 70102910 (+)
G540011 NA non-coding upstream 15758 70096415 ~ 70097945 (+)
G540008 NA non-coding upstream 22720 70089960 ~ 70090983 (+)
G540059 NA non-coding downstream 84395 70202603 ~ 70203369 (+)
G540060 NA non-coding downstream 85535 70203743 ~ 70205028 (+)
G540061 NA non-coding downstream 85772 70203980 ~ 70211239 (+)
G540062 NA non-coding downstream 87949 70206157 ~ 70210419 (+)
G540074 NA non-coding downstream 119084 70237292 ~ 70237902 (+)
G539959 NA other upstream 94226 70015270 ~ 70019477 (+)
G539068 NA other upstream 746061 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1101741 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1110875 68996083 ~ 69002828 (+)
G540179 NA other downstream 363742 70481950 ~ 70484368 (+)
G541903 NA other downstream 1681832 71800040 ~ 71804462 (+)
G542053 NA other downstream 1983172 72101380 ~ 72102474 (+)

Expression


Co-expression Network