G540060


Basic Information

Item Value
gene id G540060
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70203743 ~ 70205028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611605
gttctgaaggttatgcgtgtgtttgtgcgtgtgttataggttctgaaggttatgtgtatgtgtgtgtgtgtgtgtgtgtgttataggttctgaaggttatgtgtgtgcgtgtgtgtgtgtgtgtatgtgtgttataggttctgaaggttatgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgctataggttctgaaggttatgtgtgtgtttgtgtgtgtgtgtgttataagttctgaaggttatgtgtgtgtgtgtgtgtgtgtgttataggttctgaagattatgtgggtgtgtgtgtgttataggttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611605 True 318 lncRNA 0.42 2 70203743 70205028

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 145680 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 165286 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 174814 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 446910 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 471087 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 346735 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 389719 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 410448 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1476573 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1756896 71961924 ~ 71967802 (+)
G540059 NA non-coding upstream 374 70202603 ~ 70203369 (+)
G540020 NA non-coding upstream 85535 70113703 ~ 70118208 (+)
G540021 NA non-coding upstream 92519 70109167 ~ 70111224 (+)
G540017 NA non-coding upstream 97737 70104655 ~ 70106006 (+)
G540015 NA non-coding upstream 100833 70102603 ~ 70102910 (+)
G540062 NA non-coding downstream 1129 70206157 ~ 70210419 (+)
G540074 NA non-coding downstream 32264 70237292 ~ 70237902 (+)
G540077 NA non-coding downstream 37898 70242926 ~ 70243325 (+)
G540096 NA non-coding downstream 72935 70277963 ~ 70278178 (+)
G540097 NA non-coding downstream 77714 70282742 ~ 70282959 (+)
G539959 NA other upstream 184266 70015270 ~ 70019477 (+)
G539068 NA other upstream 836101 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1191781 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1200915 68996083 ~ 69002828 (+)
G540179 NA other downstream 276922 70481950 ~ 70484368 (+)
G541903 NA other downstream 1595012 71800040 ~ 71804462 (+)
G542053 NA other downstream 1896352 72101380 ~ 72102474 (+)

Expression


Co-expression Network