G540077


Basic Information

Item Value
gene id G540077
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70242926 ~ 70243325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611629
agagacagagagagagaggtgtagtggAGACATAGCGAGAggtgtagtagagacagagagagagagaggtgtagtagagacagagagagggcggtgtagtagagacagagagatagagaggtgtagtagagacagagagagaggtgtagtagtgacatcgagagagaggggtgtagtagagacagagggagagagagaggtgtagtagagacagagagagagagagaggtgtagtagtgacatcgagagagaggggtgtagtagagacagagggagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611629 True 279 lncRNA 0.50 2 70242926 70243325

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 184863 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 204469 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 213997 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 486093 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 510270 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 308438 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 351422 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 372151 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1438276 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1718599 71961924 ~ 71967802 (+)
G540074 NA non-coding upstream 5024 70237292 ~ 70237902 (+)
G540061 NA non-coding upstream 31687 70203980 ~ 70211239 (+)
G540062 NA non-coding upstream 32507 70206157 ~ 70210419 (+)
G540060 NA non-coding upstream 37898 70203743 ~ 70205028 (+)
G540059 NA non-coding upstream 39557 70202603 ~ 70203369 (+)
G540096 NA non-coding downstream 34638 70277963 ~ 70278178 (+)
G540097 NA non-coding downstream 39417 70282742 ~ 70282959 (+)
G540100 NA non-coding downstream 47752 70291077 ~ 70291315 (+)
G540101 NA non-coding downstream 51829 70295154 ~ 70295551 (+)
G540109 NA non-coding downstream 70036 70313361 ~ 70313598 (+)
G539959 NA other upstream 223449 70015270 ~ 70019477 (+)
G539068 NA other upstream 875284 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1230964 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1240098 68996083 ~ 69002828 (+)
G540179 NA other downstream 238625 70481950 ~ 70484368 (+)
G541903 NA other downstream 1556715 71800040 ~ 71804462 (+)
G542053 NA other downstream 1858055 72101380 ~ 72102474 (+)

Expression


Co-expression Network