G540096


Basic Information

Item Value
gene id G540096
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70277963 ~ 70278178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611648
GAAAGTTAGAGGGTAGAGGTGGACTGGAGAGAGATTAGAGGCAGGAAATGAGAAAATGAGAATCAAatcaacagagaggagaggagaaatagagtGACAGTCTGCACTGTGTTCCCATGGTTATACTCAGCCACTCAACAGTGAGAAAGCTCATTACTGTACCTATCATCCATATACACTACCCCAAGCTGGGAGACACTGAGATCACCATTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611648 True 216 lncRNA 0.45 1 70277963 70278178

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 219900 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 239506 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 249034 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 521130 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 545307 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 273585 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 316569 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 337298 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1403423 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1683746 71961924 ~ 71967802 (+)
G540077 NA non-coding upstream 34638 70242926 ~ 70243325 (+)
G540074 NA non-coding upstream 40061 70237292 ~ 70237902 (+)
G540061 NA non-coding upstream 66724 70203980 ~ 70211239 (+)
G540062 NA non-coding upstream 67544 70206157 ~ 70210419 (+)
G540060 NA non-coding upstream 72935 70203743 ~ 70205028 (+)
G540097 NA non-coding downstream 4564 70282742 ~ 70282959 (+)
G540100 NA non-coding downstream 12899 70291077 ~ 70291315 (+)
G540101 NA non-coding downstream 16976 70295154 ~ 70295551 (+)
G540109 NA non-coding downstream 35183 70313361 ~ 70313598 (+)
G540110 NA non-coding downstream 37441 70315619 ~ 70315847 (+)
G539959 NA other upstream 258486 70015270 ~ 70019477 (+)
G539068 NA other upstream 910321 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1266001 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1275135 68996083 ~ 69002828 (+)
G540179 NA other downstream 203772 70481950 ~ 70484368 (+)
G541903 NA other downstream 1521862 71800040 ~ 71804462 (+)
G542053 NA other downstream 1823202 72101380 ~ 72102474 (+)

Expression


Co-expression Network