G540100


Basic Information

Item Value
gene id G540100
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70291077 ~ 70291315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611652
ATGAGAGCGAGGTCGACCCCTGTGGCCCTATTTCAGCTCGTCTGTGAGTTAGGTCAGATCTCCACCTGACCTTTGACCCTGCTGGAGGCTCCACCTGTACTCCACAACTGCCATAGTCACGAGGTCAGGAGGTCAAACATGACTGGAGCTCAGAATGGCCTTGGGAACAGACAATCAAGGTCAGCACAAACAACCTCTTTCTCACTCTAgaatttttctctccctctccctatttcttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611652 True 239 lncRNA 0.51 1 70291077 70291315

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 233014 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 252620 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 262148 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 534244 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 558421 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 260448 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 303432 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 324161 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1390286 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1670609 71961924 ~ 71967802 (+)
G540097 NA non-coding upstream 8118 70282742 ~ 70282959 (+)
G540096 NA non-coding upstream 12899 70277963 ~ 70278178 (+)
G540077 NA non-coding upstream 47752 70242926 ~ 70243325 (+)
G540074 NA non-coding upstream 53175 70237292 ~ 70237902 (+)
G540061 NA non-coding upstream 79838 70203980 ~ 70211239 (+)
G540101 NA non-coding downstream 3839 70295154 ~ 70295551 (+)
G540109 NA non-coding downstream 22046 70313361 ~ 70313598 (+)
G540110 NA non-coding downstream 24304 70315619 ~ 70315847 (+)
G540117 NA non-coding downstream 53738 70345053 ~ 70345264 (+)
G540158 NA non-coding downstream 158047 70449362 ~ 70453410 (+)
G539959 NA other upstream 271600 70015270 ~ 70019477 (+)
G539068 NA other upstream 923435 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1279115 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1288249 68996083 ~ 69002828 (+)
G540179 NA other downstream 190635 70481950 ~ 70484368 (+)
G541903 NA other downstream 1508725 71800040 ~ 71804462 (+)
G542053 NA other downstream 1810065 72101380 ~ 72102474 (+)

Expression


Co-expression Network