G540109


Basic Information

Item Value
gene id G540109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70313361 ~ 70313598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611661
CCAGCAGATTGTTTGTGTAGACACAACCAGTTATACATTCCACAGTAACGACACGCATGCCACAAATACTACCCTCTACCCACTGACACACCTTACATTATCCTAGCTGCCACTCATACTAACCCATACACAGGAGAAATCTCTTCTATCAAATAATCAGAAGGTGAAACATGAAATATGAAGTGAGGTTGAAATATTAAAGGGGTGGAGGGCCTGGTGTGTTTTACCAGGTCTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611661 True 238 lncRNA 0.42 1 70313361 70313598

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 255298 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 274904 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 284432 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 556528 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 580705 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 238165 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 281149 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 301878 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1368003 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1648326 71961924 ~ 71967802 (+)
G540101 NA non-coding upstream 17810 70295154 ~ 70295551 (+)
G540100 NA non-coding upstream 22046 70291077 ~ 70291315 (+)
G540097 NA non-coding upstream 30402 70282742 ~ 70282959 (+)
G540096 NA non-coding upstream 35183 70277963 ~ 70278178 (+)
G540077 NA non-coding upstream 70036 70242926 ~ 70243325 (+)
G540110 NA non-coding downstream 2021 70315619 ~ 70315847 (+)
G540117 NA non-coding downstream 31455 70345053 ~ 70345264 (+)
G540158 NA non-coding downstream 135764 70449362 ~ 70453410 (+)
G540159 NA non-coding downstream 140591 70454189 ~ 70454479 (+)
G540180 NA non-coding downstream 172141 70485739 ~ 70485972 (+)
G539959 NA other upstream 293884 70015270 ~ 70019477 (+)
G539068 NA other upstream 945719 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1301399 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1310533 68996083 ~ 69002828 (+)
G540179 NA other downstream 168352 70481950 ~ 70484368 (+)
G541903 NA other downstream 1486442 71800040 ~ 71804462 (+)
G542053 NA other downstream 1787782 72101380 ~ 72102474 (+)

Expression


Co-expression Network