G540179


Basic Information

Item Value
gene id G540179
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70481950 ~ 70484368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611739
cttaaatcggccctaattaatcggccttaattaatcggccattccgattaatcggccgacctctaacacaaacactcacaaactcacacaaacacaaacacacacacacacacacacacacacacacacacaaacactcaacaaacacatacacaaacactcacaaacccacacatacacacacacatacacacacaaaaaaacctaACTCCGACACCTAACTCCGACCCCTAACCCTGTCTTTACTCCACCCTTTCTGGTTCTAACTCACTCAAACTGTGACAAGTTCCCTTtgtctctgcctccgtctctgcctccgtctctgtctccgcCTCTGTCTCCGCCTCTGTctccgcctctgtctctatctccgtctctgtccctgcccctgtctctgccccttcctctgcccctgtctctgtctccatccctgcctccgtctctgcccctgtctctgtctctgtccctgcccctgtctctgcccctgtctctgcctctgcccctgcctctgcccctgtctctgtccctgcacCTGTAGCTTTCTCTGCCTCTGCCCCTgccactgtctctgcctctgtccctgcccctgccactgtctctgcctctgtctctgcctctgccactttctctgcctctgcctctgtccctgcccctgccccGGTCCCtgccactgtctctgtctctgtcgctgtctctgtccctgtctctgcccctgtctctgtctctgcccctgtctctatctctgccactgtctctgtctctgccactgtctctgcctctgcccctgtctctgccCCTGTTTCTGTCCCTgccactgtctctgcctctgcccctgtctctgtccctgcccctgtctctatctctgcccCTGTCGCTGTCTCTGCCCCTGTCgctgtctctgcccctgtctctgtctctgccactgtctctgtccctgcccctgtctctgtctttgtctctgcctCTGCCCCTGACACTGTCTCTGCCCCTGTCGCTGTCTCTACCCCTGTCgctgtctctgcccctgtctctgccactgtctctgtctctgcccctgtcgctgtctctgcccctgtctctgtctctgccgctgtctctatctctgccgctgtctccatctctgccgctgtctctgcctctgcccctgtctctgcctctgtctctgcccctgtctctgcccctgtctctgtctctgcccctgtctctgtctctgcccctgtctctgtctctgcccctgtctctgccactgtctctgtctctgcatctgtctctgcctctgcccctgcccctgtctctgcccctgcccctgtctctgcccctgccactgtctctgcccctgccactgtctctgcccctgtctctgccCTTGTCTCTGCCCTTgccactgtctctgcctctgcccctgtctctgcccctgccactgtctctgcctatgtctctgcctctgtccctgccactgtctctgcctctgcccctgcccctgcccctgtctCTGCCCCTGCCCCTGTCTATGCCCCTGCCAATgtctctgcccctgcctctgccCCTGCCACTGTCTTTGCCActgcctctacctctgtccctgtctctgtctctgcctctgcctctgtctctgcctctgtctctgccactgtctctgccactgtctctgcctctgccccTGCCACGGTCTCTGTTTCTGCCCCTgccactgtctctgcctctgcccctgtctctgcccctgtctctgtctctgccactgtctctgtctctgcccctgcctctgtctctgccactgtcactgcctctgcccctgtctctgtctctgcctctgcccctgcctctgtctctgccactgtcactgtcgctgtctctgtctctgcccctgtctctgtctctacccctgTCTCTGCCACTGCCACtgtctctgccactgtctctgcctctgcccctgccactgtctctgcccctgtctctgtctctgtctctgcccctgcctctgtctctgcccctgcctctgtctctgccccagtctctgtctctgccactgTCACTGCCACTGTCACTGCCactgcccctgtctctgtctctgcccctgtctctgtctctgtctctgcccctgtctctgcctctgcccctgtctctgccTATGTCTAtgcccctgcctctgtctctgcccctgtctctgccactgtctctgcctctgtctctgcctctgcccctgcctctgtctttgcccctgtctctgtctctgcccctgtctctgtctctgcctctgcccctgtctctgtctctgcccctgcctctgtctctgccactgtctctgcctctgcccctgtctctgtctctgcctctgcccctgcctctgtctctgccactgtctctgcctctgcctctgcccctgtctctgtctctgcctctgcccctgcctctgtctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611739 True 2419 TUCP 0.60 1 70481950 70484368

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 423887 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 443493 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 453021 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 725117 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 749294 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 67395 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 110379 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 131108 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1197233 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1477556 71961924 ~ 71967802 (+)
G540159 NA non-coding upstream 27471 70454189 ~ 70454479 (+)
G540158 NA non-coding upstream 28540 70449362 ~ 70453410 (+)
G540117 NA non-coding upstream 136686 70345053 ~ 70345264 (+)
G540110 NA non-coding upstream 166103 70315619 ~ 70315847 (+)
G540109 NA non-coding upstream 168352 70313361 ~ 70313598 (+)
G540180 NA non-coding downstream 1371 70485739 ~ 70485972 (+)
G540186 NA non-coding downstream 11474 70495842 ~ 70496042 (+)
G540187 NA non-coding downstream 13027 70497395 ~ 70497604 (+)
G540191 NA non-coding downstream 22994 70507362 ~ 70507718 (+)
G540201 NA non-coding downstream 50120 70534488 ~ 70535213 (+)
G539959 NA other upstream 462473 70015270 ~ 70019477 (+)
G539068 NA other upstream 1114308 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1469988 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1479122 68996083 ~ 69002828 (+)
G541903 NA other downstream 1315672 71800040 ~ 71804462 (+)
G542053 NA other downstream 1617012 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1666652 72151020 ~ 72152394 (+)

Expression


Co-expression Network