G540180


Basic Information

Item Value
gene id G540180
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70485739 ~ 70485972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611740
cccctgcctctgtctctgcccctgtctctgtctctgcccctgtctctgtctctgtctctgccactgccactgtctctgtctctgcccctgcctctgtctctgccactgtctctgcctctgcccctgtctctgcctctgccactgtctctgccACTGTCACTGTcgctgtctctgcctctgcccctgtctctgcccctgtctctgtctctgtccctgccccagtctctgtctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611740 True 234 lncRNA 0.62 1 70485739 70485972

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 427676 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 447282 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 456810 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 728906 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 753083 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 65791 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 108775 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 129504 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1195629 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1475952 71961924 ~ 71967802 (+)
G540159 NA non-coding upstream 31260 70454189 ~ 70454479 (+)
G540158 NA non-coding upstream 32329 70449362 ~ 70453410 (+)
G540117 NA non-coding upstream 140475 70345053 ~ 70345264 (+)
G540110 NA non-coding upstream 169892 70315619 ~ 70315847 (+)
G540109 NA non-coding upstream 172141 70313361 ~ 70313598 (+)
G540186 NA non-coding downstream 9870 70495842 ~ 70496042 (+)
G540187 NA non-coding downstream 11423 70497395 ~ 70497604 (+)
G540191 NA non-coding downstream 21390 70507362 ~ 70507718 (+)
G540201 NA non-coding downstream 48516 70534488 ~ 70535213 (+)
G540211 NA non-coding downstream 68135 70554107 ~ 70574553 (+)
G540179 NA other upstream 1371 70481950 ~ 70484368 (+)
G539959 NA other upstream 466262 70015270 ~ 70019477 (+)
G539068 NA other upstream 1118097 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1473777 69007055 ~ 69018414 (+)
G541903 NA other downstream 1314068 71800040 ~ 71804462 (+)
G542053 NA other downstream 1615408 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1665048 72151020 ~ 72152394 (+)

Expression


Co-expression Network