G540187


Basic Information

Item Value
gene id G540187
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70497395 ~ 70497604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611747
CTTTTACACTTAATTCAGCTCGTGTCATGCAAATGTAGCTTTTTGCGACCCACGGAAACAACTGAAGACGGCGAACACAAAATGTAAAATCCTCAAAAGTTGTTATGAGAAAGCAGCACCGCTATGTCAACCGAGCTCGGTGCTTATTATCGGAAGTATTAGGTTGCGAAATCCAACTTTTTGTATAGaatgttaatgatacagtatgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611747 True 210 lncRNA 0.39 1 70497395 70497604

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 439332 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 458938 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 468466 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 740562 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 764739 69724498 ~ 69732656 (+)
LOC110526485 fam92b coding downstream 54159 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 97143 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 117872 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1183997 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1464320 71961924 ~ 71967802 (+)
G540186 NA non-coding upstream 1353 70495842 ~ 70496042 (+)
G540180 NA non-coding upstream 11423 70485739 ~ 70485972 (+)
G540159 NA non-coding upstream 42916 70454189 ~ 70454479 (+)
G540158 NA non-coding upstream 43985 70449362 ~ 70453410 (+)
G540117 NA non-coding upstream 152131 70345053 ~ 70345264 (+)
G540191 NA non-coding downstream 9758 70507362 ~ 70507718 (+)
G540201 NA non-coding downstream 36884 70534488 ~ 70535213 (+)
G540211 NA non-coding downstream 56503 70554107 ~ 70574553 (+)
G540221 NA non-coding downstream 81016 70578620 ~ 70578901 (+)
G540228 NA non-coding downstream 96201 70593805 ~ 70594162 (+)
G540179 NA other upstream 13027 70481950 ~ 70484368 (+)
G539959 NA other upstream 477918 70015270 ~ 70019477 (+)
G539068 NA other upstream 1129753 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1485433 69007055 ~ 69018414 (+)
G541903 NA other downstream 1302436 71800040 ~ 71804462 (+)
G542053 NA other downstream 1603776 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1653416 72151020 ~ 72152394 (+)

Expression


Co-expression Network