G540221


Basic Information

Item Value
gene id G540221
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70578620 ~ 70578901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611788
gacacacagtatagagagagtacattttcatggagaacaaaggaaatccttccacctcacagaacttgaggtacgaacaaatgtcatgttccggagaaagtataaaagaacggtgaagaatccagctaggAACTGGTCcttttgtcacaacttggggaagctcatgggagatggtgtggccacattaccataacgctgtttatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgtcacatttcaggcttcaaacataaagatat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611788 True 282 lncRNA 0.43 1 70578620 70578901

Neighbor

gene id symbol gene type direction distance location
LOC110526485 fam92b coding upstream 20522 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 520557 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 540163 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 549691 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 821787 69739619 ~ 69756833 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 15846 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 36575 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1102700 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1383023 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1432194 72011095 ~ 72021875 (+)
G540211 NA non-coding upstream 4067 70554107 ~ 70574553 (+)
G540201 NA non-coding upstream 43407 70534488 ~ 70535213 (+)
G540191 NA non-coding upstream 70902 70507362 ~ 70507718 (+)
G540187 NA non-coding upstream 81016 70497395 ~ 70497604 (+)
G540186 NA non-coding upstream 82578 70495842 ~ 70496042 (+)
G540228 NA non-coding downstream 14904 70593805 ~ 70594162 (+)
G540231 NA non-coding downstream 24494 70603395 ~ 70603644 (+)
G540233 NA non-coding downstream 26741 70605642 ~ 70605879 (+)
G540237 NA non-coding downstream 29454 70608355 ~ 70608611 (+)
G540179 NA other upstream 94252 70481950 ~ 70484368 (+)
G539959 NA other upstream 559143 70015270 ~ 70019477 (+)
G539068 NA other upstream 1210978 69361641 ~ 69367642 (+)
G541903 NA other downstream 1221139 71800040 ~ 71804462 (+)
G542053 NA other downstream 1522479 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1572119 72151020 ~ 72152394 (+)
saa saa other downstream 2086559 72665460 ~ 72666872 (+)

Expression


Co-expression Network