G540231


Basic Information

Item Value
gene id G540231
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70603395 ~ 70603644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611805
TTGCACAATGCATGTCTCAATCTGTCCATCTGGCTTGTAAAAATCCTTTGTTTCAGTGTCTATTTGTCGACTTGTCTGTACCTTCAACCTTGGTTCAGTAGCTAGACAAGCATTTTTGAGTTAACTACACAAACAGGCAGTAGATTCAAGTAGGGAAGCACGATTATTTAATATCCTATATTCCTCCTGGGTGGATATTACTGTAAATTCTATTTTAGGGAGATTCATGTAGCATAAAATCATCATTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611805 True 250 lncRNA 0.37 1 70603395 70603644

Neighbor

gene id symbol gene type direction distance location
si:ch73-103b9.2 cssa26h16orf46 coding upstream 4207 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 45297 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 545332 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 564938 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 574466 70026162 ~ 70028929 (+)
cmc2 cmc2 coding downstream 11832 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1077957 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1358280 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1407451 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 1470506 72074150 ~ 72098245 (+)
G540228 NA non-coding upstream 9233 70593805 ~ 70594162 (+)
G540221 NA non-coding upstream 24494 70578620 ~ 70578901 (+)
G540211 NA non-coding upstream 28842 70554107 ~ 70574553 (+)
G540201 NA non-coding upstream 68182 70534488 ~ 70535213 (+)
G540233 NA non-coding downstream 1998 70605642 ~ 70605879 (+)
G540237 NA non-coding downstream 4711 70608355 ~ 70608611 (+)
G540239 NA non-coding downstream 20189 70623833 ~ 70627142 (+)
G540249 NA non-coding downstream 25197 70628841 ~ 70629118 (+)
G540179 NA other upstream 119027 70481950 ~ 70484368 (+)
G539959 NA other upstream 583918 70015270 ~ 70019477 (+)
G539068 NA other upstream 1235753 69361641 ~ 69367642 (+)
G541903 NA other downstream 1196396 71800040 ~ 71804462 (+)
G542053 NA other downstream 1497736 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1547376 72151020 ~ 72152394 (+)
saa saa other downstream 2061816 72665460 ~ 72666872 (+)

Expression


Co-expression Network