G540237


Basic Information

Item Value
gene id G540237
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70608355 ~ 70608611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611811
gcagtggtgggtggtataaggtgctttagtaacaaaagtgatggcactgtgataaactgcatccagtttgctgagtagagtattggaagctattttgtagatgacatcgccgaagtcgaggatcggtaggatagtcagttttactagggtaggtttggcggcgtgagtgaaggaggctttgttgcggaatagaaaaccgactctagatttgaatttagattggagatgtttgatatgagtctggaaggagagtttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611811 True 257 lncRNA 0.44 1 70608355 70608611

Neighbor

gene id symbol gene type direction distance location
si:ch73-103b9.2 cssa26h16orf46 coding upstream 9167 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 50257 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 550292 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 569898 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 579426 70026162 ~ 70028929 (+)
cmc2 cmc2 coding downstream 6865 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1072990 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1353313 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1402484 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 1465539 72074150 ~ 72098245 (+)
G540233 NA non-coding upstream 2476 70605642 ~ 70605879 (+)
G540231 NA non-coding upstream 4711 70603395 ~ 70603644 (+)
G540228 NA non-coding upstream 14193 70593805 ~ 70594162 (+)
G540221 NA non-coding upstream 29454 70578620 ~ 70578901 (+)
G540239 NA non-coding downstream 15222 70623833 ~ 70627142 (+)
G540249 NA non-coding downstream 20230 70628841 ~ 70629118 (+)
G540251 NA non-coding downstream 23721 70632332 ~ 70632799 (+)
G540714 NA non-coding downstream 88883 70697494 ~ 70697738 (+)
G540179 NA other upstream 123987 70481950 ~ 70484368 (+)
G539959 NA other upstream 588878 70015270 ~ 70019477 (+)
G539068 NA other upstream 1240713 69361641 ~ 69367642 (+)
G541903 NA other downstream 1191429 71800040 ~ 71804462 (+)
G542053 NA other downstream 1492769 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1542409 72151020 ~ 72152394 (+)
saa saa other downstream 2056849 72665460 ~ 72666872 (+)

Expression


Co-expression Network