G540239


Basic Information

Item Value
gene id G540239
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70623833 ~ 70627142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU611819
ATTAATGTCATAGTTTATTCAAAGCAGCTCGACCCCCAAACTCTCACAACGTATGGATACAGCATCCTACTGACAAAAGATACAGCTTCTAAGGCACCCCGAGGTGTGATTTTAGACGAGAGAAAGGAGTagaaactcaacatgtaataggTTTGTAAATGCTTGGAAGATGCATAGAAACATCATATGGTGATGATAGGAGTTTACAAACTAAACCTAAACACATGGCTTACAGGGCCGGTCATCATTTTCAAGGATAAGTCCTCAACAAATGAATTATAACGGTTTTACTTCAAATGATTCATTCAAACACAATGTTACTCTATTTGGGTCCTGGGAgagcagcctggtctcagactatacataacaaagtaaatgtaaactgagatacaaatttgtatgatatgttacgtttggtatggttagaTAAGACAGATGTTTACTTCAGGCAAAAATGAGTTGGTGTGGGGTGGATGGGTTGGTGTATAACATGAACGTCTAGCAACctaaaggttgtgagttcaaatctcatcacgaccaagtttagcattttagctaattagtaaCTTTTCCTCTACTTGCTACTTTTTAGCTAGTTTGCAACTACttggcatgttagctaacccttcccaaacTTTAATACTAACCCCTAACctcagctaatgttagccagctagctaatgttaaccacctagctagaattcggaACATATACGTTTAGCAAATCGtactattttgtacattttgcaaattcgtaacatatcatacgaacggttgatggacatccacaaatgaatacataccatacagaaGTAACATagcatactaaatggagtgtatGGGTTTACGTACATAATAAGACAAAATACTCTTGAGACCAGGTTGGGGAGAGGTACAGGCAAAACTCTAATCTTGAATATATTAATATACATTTAATCTTACACTATACTTTAGCAATATACTGATCAACACACAAATAATACATCAATTAGGGAAATTCAGGGAAAGTGTTATTCAAATATAATTGGGAATGGTTGATTAGAAATTGATAGAGCTTTGATTTGTCAGAGCTGTTAATAGCAATATTACTTTAAATGTTTCAAAGTTTGGCATAAAGTGGTTATCAACAGCCTTTAAAAATAATTATGCTACATGTAACCATgtttttggtgtgtgtttgttgtgtcacCACTATCACACAGGGCAGATCTAGGGAAAAAAGCAATTTGGATCTGGAACAGAAGATAAGAGCGAAAGAGATGCCTCTGGGGAAAGGGAAACATTATGGCACTGCAGCCCCAAGGGGAACTTGAGCACTaacttaaaataaatacaaataataattgtGCAAGATTTCTAACATTGCTTACTATGGCAATAGAAAACATACCCTGAAATGTAAAGTATTTTGACAGGCAACACACGTATCTACAATATTGTACATGCATATAGTTACACCATATAACACCTACATGGTGCATATATGTATACAACTGCAAAAACCCACCACTTCCTGAATGATACAAAACAATTTCCACAAAACTACATTTCATTATTGGGTAAACCAAAAATAGATATCCATACATACAATATATGTAGATATACATTTCCCATTTCCTGAAGCCATTATCACATGCAGGTATTATCTGCTTCAGCTGCACTACTACTGCATCTTCACAACACAGACAGCCAACAGACAAAAAGTGCAGTGATTACTCTGGGACAAAACATCTTTCTGTGGTTACAAAAATACACAATGTCTCACTAATAACCGATTGCAAGGTAATATCAAAATAATTATCTGTCCAAATATCATAGCTAAACTCTTCACAATGTAATATACATGCCTATATAATCAACGGGGTATCAAACCCTGGTCGTCTTCACGATTCAAGACTGCagtagcccactgagctaaaggccgGGCATTAGCTCTGGGAGCTAAAagaagtcttcaggtctcaggcaaggttagtCAACACAGAAGAGTAGTTAAGCAAACCCCTCCCGCTACACCTTTACACTGTAATACACGTCATATATGTACCTTGATGATAATGATGACGCTGCACTTGTTGCTGCTGATATAATAACGATGACATATGTCTcaccctcattctctctttcctccctttcCCAGGGAGAGGTCTCCTTTTGATCTATCGACAGTCTCCACATTCTAATGAAAAGATGGAATCAGACAGCTCTGGTTCTCTATGGGAGTGCTGGTCGTGGTCAAAGAGGGCCCTTCTATATATATTCACATTCAATCAGAGGTCAAACACACCCTTACTGACAAACCAAATACAAGCAATTGAATAAACACTTCCAAAAGAGCATCGCAAAATGGTCTATATAAATCCAGAAAGAGTTCACTGCCCATTCACAGTGACTTCCCACTTATGGGTGTGTATCATTGGGCATGACCTACCTCTAACTCTTCCCCAGTGGCCCTCCTATTACACCACACCTAATTCAATGGACAGGTTTCACTTCAATTATTATTTACTTCTTTGGCCAGGGTTACTGCATTGTAAGGTGAGAAGATATATGTTCCACTTTGACCTCAAGCATAGCTTTGATTTTCACTACACCTCAGAGCCCAGGAGGACACTTCACCTCAAAACAGAAAGACTAAAGcaagatacaaaaaaaaaaaaacacagcagaCTAATAGaaaatatatacacatggtatgctttttttGTATTTAGGATCAAAcctaaatacattttcaaataaataattgaaCAATGACAGCCATCAGATGAGCTCTTTTGCCTCCACACACTCCCACAACATTCTGCTGCTGTGTATCCGTTTCCTGAAGAGCCTTGTTCACGGTCACTGGACTCCCAGTAGGCCATTATGAATGCAGAATGAATCCTCTCCAGAAGTTGATGCTTTGTTCATCTTACAGGCAGGGACGTTGAGGGATGACCAAAGTAAAACAAACATTGATTGTGGTGCTCTGCAGGCCCAGATGTTGACGAGAGGAGATAAGGCCTCGGAGACTGGCAAACTACGCTCTGCTGGTTGTTAAAGAAGACTGTTGGTAATTGAAGATCAAAGCCATATATCTTCAGGGATGTTGCTCAGTATGTAACTGAAGACCAGATCTCGTGGCCCATAGATAGTTCTGCAGCTGTGTGGAGGTGAGAGGTCAGTTATCATACACCTTGTTCTGCAGGTAGCTGAAGAGCGCCTCCAGTCCCTTGGTGGAGCACCACAGCTGTTTGAGCATCTGACACTCTTTCTCATTCACTTCCTCCAGAACCGACTTCAGGATGCTCCGCACCAGGCATTTAGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU611819 True 3310 lncRNA 0.39 1 70623833 70627142

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 2323 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 24645 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 65735 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 565770 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 585376 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 1054459 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1334782 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1383953 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 1447008 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 1490596 72117738 ~ 72135463 (+)
G540237 NA non-coding upstream 15222 70608355 ~ 70608611 (+)
G540233 NA non-coding upstream 17954 70605642 ~ 70605879 (+)
G540231 NA non-coding upstream 20189 70603395 ~ 70603644 (+)
G540249 NA non-coding downstream 1699 70628841 ~ 70629118 (+)
G540251 NA non-coding downstream 5190 70632332 ~ 70632799 (+)
G540714 NA non-coding downstream 70352 70697494 ~ 70697738 (+)
G540745 NA non-coding downstream 97850 70724992 ~ 70725227 (+)
G540771 NA non-coding downstream 118037 70745179 ~ 70745382 (+)
G540179 NA other upstream 139465 70481950 ~ 70484368 (+)
G539959 NA other upstream 604356 70015270 ~ 70019477 (+)
G541903 NA other downstream 1172898 71800040 ~ 71804462 (+)
G542053 NA other downstream 1474238 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1523878 72151020 ~ 72152394 (+)
saa saa other downstream 2038318 72665460 ~ 72666872 (+)
G542890 NA other downstream 2138539 72765681 ~ 72766851 (+)

Expression


Co-expression Network