G540771


Basic Information

Item Value
gene id G540771
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70745179 ~ 70745382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU612414
acatttctcagccttcacgaacaggtcatgctccaacagtcgaccaagcaacttgcgcaccagggacacatgctcggcacgtgtagcggagtatatcagaatgtcgtcgatatacaccactacaccctgcctgtgcaggtcccggaaaatcttgtctacaaaggattggaagactgatttATCAACCCGTACGGcttgacgagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU612414 True 204 lncRNA 0.51 1 70745179 70745382

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 123669 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 145991 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 187081 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 687116 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 706722 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 936219 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1216542 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1265713 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 1328768 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 1372356 72117738 ~ 72135463 (+)
G540745 NA non-coding upstream 19952 70724992 ~ 70725227 (+)
G540714 NA non-coding upstream 47441 70697494 ~ 70697738 (+)
G540251 NA non-coding upstream 112380 70632332 ~ 70632799 (+)
G540249 NA non-coding upstream 116061 70628841 ~ 70629118 (+)
G540239 NA non-coding upstream 118037 70623833 ~ 70627142 (+)
G540779 NA non-coding downstream 9014 70754396 ~ 70754614 (+)
G540883 NA non-coding downstream 109420 70854802 ~ 70855116 (+)
G540885 NA non-coding downstream 110494 70855876 ~ 70856103 (+)
G541458 NA non-coding downstream 586331 71331713 ~ 71331915 (+)
G541528 NA non-coding downstream 647352 71392734 ~ 71392969 (+)
G540179 NA other upstream 260811 70481950 ~ 70484368 (+)
G539959 NA other upstream 725702 70015270 ~ 70019477 (+)
G541903 NA other downstream 1054658 71800040 ~ 71804462 (+)
G542053 NA other downstream 1355998 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1405638 72151020 ~ 72152394 (+)
saa saa other downstream 1920078 72665460 ~ 72666872 (+)
G542890 NA other downstream 2020299 72765681 ~ 72766851 (+)

Expression


Co-expression Network